Package: sevenbridges

Version: 1.17.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:sevenbridges.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings sevenbridges_1.17.0.tar.gz

StartedAt: 2020-01-16 08:49:39 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 08:54:31 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 291.2 seconds

RetCode: 0

Status:  OK

CheckDir: sevenbridges.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:sevenbridges.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings sevenbridges_1.17.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/sevenbridges.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sevenbridges/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sevenbridges’ version ‘1.17.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sevenbridges’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
Flow        91.361  0.388  91.800
Tool-class  25.423  0.122  25.552
link_what   15.134  0.023  15.232
link        13.628  0.020  13.649
convert_app 10.177  0.020  10.198
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL sevenbridges
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘sevenbridges’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sevenbridges)

R Under development (unstable) (2019-12-14 r77572) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library("testthat")
> library("sevenbridges")
> test_check("sevenbridges")
══ testthat results  ═══════════════════════════════════════════════════════════
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
  4.761   0.483   5.185 

name	user	system	elapsed
App-class	0.000	0.000	0.001
Auth-class	0.014	0.002	0.016
Binding	0.112	0.004	0.115
CCBList	0.025	0.001	0.025
CWL	0.002	0.001	0.003
CommandInputParameter-class	0.049	0.001	0.050
CommandInputSchema-class	0.038	0.000	0.038
CommandLineBinding-class	0.014	0.000	0.014
CommandLineTool	0.030	0.001	0.032
CommandOutputBinding-class	0.014	0.000	0.014
CommandOutputParameter-class	0.023	0.000	0.024
CommandOutputSchema-class	0.024	0.001	0.024
DSCList	0.025	0.001	0.025
Enum	0.045	0.002	0.046
Expression-class	0.012	0.000	0.012
ExpressionTool-class	0.034	0.001	0.035
File-class	0.147	0.004	0.150
Files-class	0.012	0.000	0.013
Flow	91.361	0.388	91.800
Metadata	0.160	0.003	0.162
Parameter	0.052	0.001	0.053
Process	0.085	0.001	0.086
ProcessRequirement	0.106	0.001	0.107
Schema	0.037	0.000	0.037
TaskHook	0.003	0.000	0.003
Tool-class	25.423	0.122	25.552
Workflow	0.067	0.001	0.067
WorkflowStep	0.013	0.001	0.014
addIdNum	0.001	0.000	0.001
api	0.000	0.000	0.001
as-methods	0.146	0.002	0.148
batch	0.002	0.001	0.001
cli_list_projects	0.000	0.000	0.001
cli_list_tags	0.001	0.000	0.001
cli_upload	0.000	0.000	0.001
convert_app	10.177	0.020	10.198
cwl-utils	0.208	0.003	0.212
delete-methods	0.000	0.001	0.000
download-methods	0.000	0.000	0.001
get_token	0.001	0.000	0.000
get_uploader	0.000	0.000	0.001
input_output_matrix	0.216	0.005	0.221
link	13.628	0.020	13.649
link_what	15.134	0.023	15.232
project_details	0.001	0.000	0.000
project_members	0.000	0.000	0.001
requirements	0.101	0.001	0.102
response-methods	0.000	0.000	0.001
sbg_get_env	0.001	0.000	0.000
sbg_set_env	0	0	0
set_test_env	0.001	0.000	0.000
shorthand-cwl	0.031	0.001	0.032
tag-methods	0.001	0.001	0.001
test_tool_bunny	0	0	0
test_tool_cwlrun	0	0	0
test_tool_rabix	0.000	0.001	0.000
upload_complete_all	0	0	0
upload_complete_part	0.000	0.000	0.001
upload_delete	0.001	0.001	0.000
upload_info	0	0	0
upload_info_part	0	0	0
upload_init	0.000	0.001	0.001