| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:31 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE qsea PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1393/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| qsea 1.14.0 Matthias Lienhard
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
| Package: qsea |
| Version: 1.14.0 |
| Command: rm -rf qsea.buildbin-libdir && mkdir qsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qsea.buildbin-libdir qsea_1.14.0.tar.gz |
| StartedAt: 2020-10-17 11:22:20 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 11:23:16 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 56.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: qsea_1.14.0.zip |
| PackageFileSize: 910 KiB |
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### Running command:
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### rm -rf qsea.buildbin-libdir && mkdir qsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qsea.buildbin-libdir qsea_1.14.0.tar.gz
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install for i386
* installing *source* package 'qsea' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lm.c -o lm.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o qsea.dll tmp.def lm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/qsea.buildbin-libdir/00LOCK-qsea/00new/qsea/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'qsea'
finding HTML links ... done
addCNV html
addContrast html
addCoverage html
addEnrichmentParameters html
addLibraryFactors html
addNewSamples html
addOffset html
addPatternDensity html
addSeqPref html
createQseaSet html
example html
fitNBglm html
getPCA html
isSignificant html
makeTable html
normMethod html
plotCNV html
plotCoverage html
plotEnrichmentProfile html
plotPCA html
qsea-package html
qseaGLM-class html
qseaPCA-class html
qseaSet-class html
regionStats html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'qsea' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lm.c -o lm.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o qsea.dll tmp.def lm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/qsea.buildbin-libdir/qsea/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qsea' as qsea_1.14.0.zip
* DONE (qsea)