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INSTALL report for TFutils on tokay2

This page was generated on 2020-10-17 11:57:56 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE TFutils PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1796/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TFutils 1.8.0
Shweta Gopaulakrishnan
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/TFutils
Branch: RELEASE_3_11
Last Commit: a8ce37d
Last Changed Date: 2020-04-27 15:15:41 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: TFutils
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TFutils_1.8.0.tar.gz && rm -rf TFutils.buildbin-libdir && mkdir TFutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFutils.buildbin-libdir TFutils_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TFutils_1.8.0.zip && rm TFutils_1.8.0.tar.gz TFutils_1.8.0.zip
StartedAt: 2020-10-16 18:31:30 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:32:23 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 52.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TFutils_1.8.0.tar.gz && rm -rf TFutils.buildbin-libdir && mkdir TFutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFutils.buildbin-libdir TFutils_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TFutils_1.8.0.zip && rm TFutils_1.8.0.tar.gz TFutils_1.8.0.zip
###
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install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'TFutils' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TFutils'
    finding HTML links ... done
    HGNCmap                                 html  
    TFCatalog-class                         html  
    TFCatalog                               html  
    TFtargs                                 html  
    URL_s3_tf                               html  
    anchor_pmids                            html  
    browse_lambert_gwaslinks                html  
    browse_lambert_main                     html  
    cisbpTFcat                              html  
    cisbpTFcat_2.0                          html  
    defaultCircosParms                      html  
    demo_fimo_granges                       html  
    directHitsInCISBP                       html  
    encode690                               html  
    fimo16                                  html  
    fimoMap                                 html  
    fimo_granges                            html  
    genemodForGviz                          html  
    genemodelDF                             html  
    get_rslocs_38                           html  
    grabTab                                 html  
    gwascat_hg19_chr17                      html  
    hocomoco.mono                           html  
    hocomoco.mono.sep2018                   html  
    importFIMO                              html  
    importFIMO_local_split                  html  
    lambert_snps                            html  
    metadata_tf                             html  
    named_tf                                html  
    retrieve_lambert_main                   html  
    seqinfo_hg19_chr17                      html  
    setupHIZE                               html  
    show-TFCatalog-method                   html  
    tffamCirc.plot                          html  
    tffamCirc.prep                          html  
    tfhash                                  html  
    tftColl                                 html  
    tftCollMap                              html  
    topTraitsOfTargets                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'TFutils' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TFutils' as TFutils_1.8.0.zip
* DONE (TFutils)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'TFutils' successfully unpacked and MD5 sums checked