Michael Shapiro
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/deltaCaptureC |
| Branch: RELEASE_3_10 |
| Last Commit: d4ea8b0 |
| Last Changed Date: 2019-10-29 13:12:00 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:33:04 -0400 (Wed, 15 Apr 2020).
| Package 432/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| deltaCaptureC 1.0.0 Michael Shapiro
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: deltaCaptureC |
| Version: 1.0.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:deltaCaptureC.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings deltaCaptureC_1.0.0.tar.gz |
| StartedAt: 2020-04-15 02:34:37 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 02:42:12 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 454.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: deltaCaptureC.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:deltaCaptureC.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings deltaCaptureC_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/deltaCaptureC.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'deltaCaptureC/DESCRIPTION' ... OK
* this is package 'deltaCaptureC' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'deltaCaptureC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getDeltaSE: warning in SummarizedExperiment(assay = list(delta =
delta), colData = colData): partial argument match of 'assay' to
'assays'
plotSignificantRegions: no visible binding for global variable 'ctr'
plotSignificantRegions: no visible binding for global variable 'delta'
plotSignificantRegions: no visible binding for global variable
'significance'
Undefined global functions or variables:
ctr delta significance
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
binSummarizedExperiment 88.34 0.01 88.40
getOverlapWeights 9.56 0.00 9.56
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
binSummarizedExperiment 101.07 0.01 101.13
getOverlapWeights 11.37 0.00 11.38
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/deltaCaptureC.Rcheck/00check.log'
for details.
deltaCaptureC.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/deltaCaptureC_1.0.0.tar.gz && rm -rf deltaCaptureC.buildbin-libdir && mkdir deltaCaptureC.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=deltaCaptureC.buildbin-libdir deltaCaptureC_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL deltaCaptureC_1.0.0.zip && rm deltaCaptureC_1.0.0.tar.gz deltaCaptureC_1.0.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 371k 100 371k 0 0 9259k 0 --:--:-- --:--:-- --:--:-- 10.0M
install for i386
* installing *source* package 'deltaCaptureC' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'deltaCaptureC'
finding HTML links ... done
bigBinSize html
binSummarizedExperiment html
binnedDeltaPlot html
binnedDeltaSE html
binnedSummarizedExperiment html
deltaSE html
dot-getRunsAndTotals html
downshiftDFtoMatrix html
generatePermutation html
getDeltaSE html
getLopsidedness html
getMeanNormalizedCountsSE html
getNormalizedCountsSE html
getOverlapWeights html
getPValueCutoff html
getRunAndLopsidednessStatistics html
getRunStatistics html
getRunStatisticsDist html
getRunTotals html
getSignificantRegions html
getSizeFactorsDF html
getSizeFactorsSE html
miniDeltaSE html
miniSE html
miniSEDF html
numPermutations html
pValue html
plotSignificantRegions html
plotTitle html
rebinToMultiple html
regionOfInterest html
significanceType html
significantRegions html
significantRegionsPlot html
smallBinSize html
smallBins html
smallSetOfSmallBins html
smallerDeltaSE html
viewpointRegion html
weightsExampleBins html
weightsExampleGr html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'deltaCaptureC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'deltaCaptureC' as deltaCaptureC_1.0.0.zip
* DONE (deltaCaptureC)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'deltaCaptureC' successfully unpacked and MD5 sums checked
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deltaCaptureC.Rcheck/examples_i386/deltaCaptureC-Ex.timings
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deltaCaptureC.Rcheck/examples_x64/deltaCaptureC-Ex.timings
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