Package: RedeR

Version: 1.34.0

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings RedeR_1.34.0.tar.gz

StartedAt: 2020-04-15 01:02:57 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 01:03:34 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 37.5 seconds

RetCode: 0

Status:  OK

CheckDir: RedeR.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings RedeR_1.34.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/RedeR.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.10-bioc/meat/RedeR.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL RedeR
###
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘RedeR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)

name	user	system	elapsed
RedPort-class	0.004	0.000	0.003
RedPort	0	0	0
RedeR.data	0.428	0.012	0.437
addEdgeBetweenContainers	0.012	0.000	0.011
addEdges	0.008	0.000	0.007
addGraph	0.008	0.000	0.007
addLegend	0.008	0.000	0.007
addNodes	0.008	0.000	0.008
addSeries	0.016	0.000	0.014
addSubgraph	0.008	0.000	0.007
addSubgraph.list	0.008	0.000	0.007
att	0.028	0.000	0.026
calld	0	0	0
cea	0.012	0.000	0.011
deSelectEdges	0.008	0.000	0.007
deSelectGraph	0.012	0.000	0.012
deSelectNodes	0.008	0.000	0.007
deleteEdges	0.008	0.000	0.007
deleteNodes	0.008	0.000	0.008
deleteSelectedEdges	0.004	0.000	0.007
deleteSelectedNodes	0.008	0.000	0.008
duplicateGraph	0.008	0.000	0.008
exitd	0.000	0.000	0.001
getContainerComponets	0.052	0.000	0.049
getEdgeIDs	0.008	0.000	0.008
getEdges	0.008	0.000	0.007
getGraph	0.008	0.000	0.008
getNodeIDs	0.008	0.000	0.008
getNodes	0.004	0.000	0.007
getSourceEdgeIDs	0.004	0.000	0.007
getTargetEdgeIDs	0.008	0.000	0.009
gtoy.rm	0	0	0
isDynamicsActive	0	0	0
mergeNodes	0.008	0.004	0.011
mergeOutEdges	0.012	0.000	0.012
nestNodes	0.008	0.000	0.009
nesthc	1.208	0.028	1.239
ping	0.004	0.000	0.001
relax	0.004	0.004	0.008
resetd	0	0	0
selectAllEdges	0.008	0.000	0.007
selectAllNodes	0.008	0.000	0.009
selectEdges	0.008	0.000	0.008
selectGraph	0.004	0.004	0.009
selectNodes	0.004	0.004	0.008
setArrowDirection	0.008	0.000	0.008
subg	0.044	0.000	0.044
updateContainerSize	0.008	0.000	0.009
updateGraph	0.008	0.000	0.008
version	0	0	0