VJ Carey
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/GGtools |
| Branch: RELEASE_3_10 |
| Last Commit: 01aaefc |
| Last Changed Date: 2019-10-29 13:07:44 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:17:45 -0400 (Wed, 15 Apr 2020).
| Package 703/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GGtools 5.22.0 VJ Carey
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GGtools |
| Version: 5.22.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GGtools_5.22.0.tar.gz && rm -rf GGtools.buildbin-libdir && mkdir GGtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GGtools.buildbin-libdir GGtools_5.22.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GGtools_5.22.0.zip && rm GGtools_5.22.0.tar.gz GGtools_5.22.0.zip |
| StartedAt: 2020-04-14 20:16:21 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:20:29 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 248.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GGtools_5.22.0.tar.gz && rm -rf GGtools.buildbin-libdir && mkdir GGtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GGtools.buildbin-libdir GGtools_5.22.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GGtools_5.22.0.zip && rm GGtools_5.22.0.tar.gz GGtools_5.22.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
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100 69.2M 100 69.2M 0 0 59.6M 0 0:00:01 0:00:01 --:--:-- 59.8M
install for i386
* installing *source* package 'GGtools' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GGtools'
finding HTML links ... done
All.cis html
CisConfig-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/CisConfig-class.Rd:115: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
EqAppr-class html
GGtools-package html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/GGtools-package.Rd:68: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
TransConfig-class html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/TransConfig-class.Rd:42: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
appraise html
b1 html
best.cis.eQTLs html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/best.cis.eQTLs.Rd:95: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/best.cis.eQTLs.Rd:136: file link 'snplocs' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/best.cis.eQTLs.Rd:196: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/best.cis.eQTLs.Rd:200: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
best.trans.eQTLs html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/best.trans.eQTLs.Rd:21: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/best.trans.eQTLs.Rd:41: file link 'ffrowapply' in package 'ff' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/best.trans.eQTLs.Rd:65: file link 'snplocs' in package 'BSgenome' does not exist and so has been treated as a topic
bindmaf html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/bindmaf.Rd:24: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
cgff2dt html
cisAssoc html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/cisAssoc.Rd:26: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
cisRun-class html
ciseqByCluster html
collectBest html
concatCis html
eqBox html
eqsens_dt html
eqtlTests html
eqtlTests.me html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/eqtlTests.me.Rd:49: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/eqtlTests.me.Rd:84: file link 'regressOut' in package 'GGBase' does not exist and so has been treated as a topic
eqtlTestsManager-class html
ex html
getCisMap html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/getCisMap.Rd:31: file link 'snplocs' in package 'BSgenome' does not exist and so has been treated as a topic
gffprocess html
gwSnpTests html
hmm878 html
pifdr html
qqhex html
richNull html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/richNull.Rd:33: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
sampsInVCF html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/sampsInVCF.Rd:17: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/sampsInVCF.Rd:39: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
scoresCis html
sensanal html
sensiCisInput-class html
sensiCisOutput-class html
simpleTiling html
snplocsDefault html
strMultPop html
transManager-class html
transScores html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/transScores.Rd:85: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/transScores.Rd:88: file link 'getSS' in package 'GGBase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6xS0ef/R.INSTALL1dbc338e2133/GGtools/man/transScores.Rd:91: file link 'ffrowapply' in package 'ff' does not exist and so has been treated as a topic
transTab html
transeqByCluster html
vcf2sm html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GGtools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GGtools' as GGtools_5.22.0.zip
* DONE (GGtools)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'GGtools' successfully unpacked and MD5 sums checked