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INSTALL report for rWikiPathways on tokay1

This page was generated on 2020-04-15 12:30:14 -0400 (Wed, 15 Apr 2020).

Package 1504/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rWikiPathways 1.6.1
Egon Willighagen
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/rWikiPathways
Branch: RELEASE_3_10
Last Commit: a022537
Last Changed Date: 2019-11-20 19:36:33 -0400 (Wed, 20 Nov 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: rWikiPathways
Version: 1.6.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/rWikiPathways_1.6.1.tar.gz && rm -rf rWikiPathways.buildbin-libdir && mkdir rWikiPathways.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rWikiPathways.buildbin-libdir rWikiPathways_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL rWikiPathways_1.6.1.zip && rm rWikiPathways_1.6.1.tar.gz rWikiPathways_1.6.1.zip
StartedAt: 2020-04-14 19:20:34 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:21:36 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 62.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/rWikiPathways_1.6.1.tar.gz && rm -rf rWikiPathways.buildbin-libdir && mkdir rWikiPathways.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rWikiPathways.buildbin-libdir rWikiPathways_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL rWikiPathways_1.6.1.zip && rm rWikiPathways_1.6.1.tar.gz rWikiPathways_1.6.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1592k  100 1592k    0     0  27.2M      0 --:--:-- --:--:-- --:--:-- 29.3M

install for i386

* installing *source* package 'rWikiPathways' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rWikiPathways'
    finding HTML links ... done
    downloadPathwayArchive                  html  
    findPathwayIdsByLiterature              html  
    findPathwayIdsByText                    html  
    findPathwayIdsByXref                    html  
    findPathwayNamesByLiterature            html  
    findPathwayNamesByText                  html  
    findPathwayNamesByXref                  html  
    findPathwayUrlsByLiterature             html  
    findPathwayUrlsByText                   html  
    findPathwayUrlsByXref                   html  
    findPathwaysByLiterature                html  
    findPathwaysByText                      html  
    findPathwaysByXref                      html  
    getColoredPathway                       html  
    getCurationTagNames                     html  
    getCurationTags                         html  
    getEveryCurationTag                     html  
    getOntologyTermIds                      html  
    getOntologyTermNames                    html  
    getOntologyTerms                        html  
    getPathway                              html  
    getPathwayHistory                       html  
    getPathwayIdsByCurationTag              html  
    getPathwayIdsByOntologyTerm             html  
    getPathwayIdsByParentOntologyTerm       html  
    getPathwayInfo                          html  
    getPathwaysByCurationTag                html  
    getPathwaysByOntologyTerm               html  
    getPathwaysByParentOntologyTerm         html  
    getRecentChanges                        html  
    getRecentChangesIds                     html  
    getRecentChangesNames                   html  
    getXrefList                             html  
    listOrganisms                           html  
    listPathwayIds                          html  
    listPathwayNames                        html  
    listPathwayUrls                         html  
    listPathways                            html  
    wikipathwaysAPI                         html  
    wikipathwaysGET                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rWikiPathways' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rWikiPathways' as rWikiPathways_1.6.1.zip
* DONE (rWikiPathways)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'rWikiPathways' successfully unpacked and MD5 sums checked