Keith Sheppard
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/maanova |
| Branch: RELEASE_3_10 |
| Last Commit: 34241b2 |
| Last Changed Date: 2019-10-29 13:07:36 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:17:24 -0400 (Wed, 15 Apr 2020).
| Package 934/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| maanova 1.56.0 Keith Sheppard
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: maanova |
| Version: 1.56.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/maanova_1.56.0.tar.gz && rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maanova.buildbin-libdir maanova_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL maanova_1.56.0.zip && rm maanova_1.56.0.tar.gz maanova_1.56.0.zip |
| StartedAt: 2020-04-14 18:56:11 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:56:54 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 43.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/maanova_1.56.0.tar.gz && rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maanova.buildbin-libdir maanova_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL maanova_1.56.0.zip && rm maanova_1.56.0.tar.gz maanova_1.56.0.zip
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install for i386
* installing *source* package 'maanova' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c makeratio.c -o makeratio.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c masvd.c -o masvd.o
masvd.c:114:2: warning: "/*" within comment [-Wcomment]
/* work on a copy of x */
^
masvd.c:154:1: warning: "/*" within comment [-Wcomment]
/*#ifndef IEEE_754
^
masvd.c:161:5: warning: "/*" within comment [-Wcomment]
/* work on a copy of x */
^
masvd.c:165:2: warning: "/*" within comment [-Wcomment]
/* ask for optimal size of work array */
^
masvd.c:189:2: warning: "/*" within comment [-Wcomment]
/* ask for optimal size of work array */
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c shift.c -o shift.o
shift.c: In function 'shift':
shift.c:27:13: warning: unused variable 'k' [-Wunused-variable]
int i, j, k;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c util.c -o util.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o maanova.dll tmp.def makeratio.o masvd.o shift.o util.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRlapack -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/maanova.buildbin-libdir/00LOCK-maanova/00new/maanova/libs/i386
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'maanova'
finding HTML links ... done
PairContrast html
Rmaanova.version html
abf1 html
adjPval html
arrayview html
consensus html
dyeswapfilter html
fill.missing html
fitmaanova html
fom html
geneprofile html
gridcheck html
kidney html
maanova-internal html
macluster html
matest html
read.madata html
resiplot html
riplot html
subset.madata html
summarytable html
transform.madata html
varplot html
volcano html
write.madata html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'maanova' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c makeratio.c -o makeratio.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c masvd.c -o masvd.o
masvd.c:114:2: warning: "/*" within comment [-Wcomment]
/* work on a copy of x */
^
masvd.c:154:1: warning: "/*" within comment [-Wcomment]
/*#ifndef IEEE_754
^
masvd.c:161:5: warning: "/*" within comment [-Wcomment]
/* work on a copy of x */
^
masvd.c:165:2: warning: "/*" within comment [-Wcomment]
/* ask for optimal size of work array */
^
masvd.c:189:2: warning: "/*" within comment [-Wcomment]
/* ask for optimal size of work array */
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c shift.c -o shift.o
shift.c: In function 'shift':
shift.c:27:13: warning: unused variable 'k' [-Wunused-variable]
int i, j, k;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c util.c -o util.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o maanova.dll tmp.def makeratio.o masvd.o shift.o util.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRlapack -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/maanova.buildbin-libdir/maanova/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'maanova' as maanova_1.56.0.zip
* DONE (maanova)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'maanova' successfully unpacked and MD5 sums checked