Wubing Zhang
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/MAGeCKFlute |
| Branch: RELEASE_3_10 |
| Last Commit: 339c060 |
| Last Changed Date: 2020-04-09 10:41:51 -0400 (Thu, 09 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:13:36 -0400 (Wed, 15 Apr 2020).
| Package 943/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MAGeCKFlute 1.6.5 Wubing Zhang
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: MAGeCKFlute |
| Version: 1.6.5 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:MAGeCKFlute.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings MAGeCKFlute_1.6.5.tar.gz |
| StartedAt: 2020-04-15 05:22:13 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 05:27:26 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 312.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MAGeCKFlute.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:MAGeCKFlute.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings MAGeCKFlute_1.6.5.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/MAGeCKFlute.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MAGeCKFlute/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MAGeCKFlute’ version ‘1.6.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.travis.yml
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MAGeCKFlute’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 12.6Mb
sub-directories of 1Mb or more:
data 5.3Mb
extdata 6.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
enrich.ORT 12.780 0.400 13.224
arrangePathview 7.144 0.312 9.202
MAView 5.968 0.040 6.023
KeggPathwayView 3.624 0.104 6.195
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.10-bioc/meat/MAGeCKFlute.Rcheck/00check.log’
for details.
MAGeCKFlute.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL MAGeCKFlute ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘MAGeCKFlute’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MAGeCKFlute)
MAGeCKFlute.Rcheck/MAGeCKFlute-Ex.timings
| name | user | system | elapsed | |
| BarView | 0.216 | 0.028 | 0.245 | |
| BatchRemove | 1.684 | 0.272 | 1.971 | |
| ConsistencyView | 1.108 | 0.020 | 1.128 | |
| CutoffCalling | 0.004 | 0.000 | 0.005 | |
| DensityDiffView | 0.920 | 0.008 | 0.933 | |
| DensityView | 0.788 | 0.000 | 0.792 | |
| EnrichAnalyzer | 0.016 | 0.000 | 0.028 | |
| EnrichedFilter | 0.012 | 0.000 | 0.012 | |
| EnrichedGeneView | 0.012 | 0.000 | 0.012 | |
| EnrichedView | 0 | 0 | 0 | |
| FluteMLE | 0.000 | 0.000 | 0.001 | |
| FluteRRA | 0.000 | 0.000 | 0.002 | |
| HeatmapView | 0.096 | 0.004 | 0.099 | |
| IdentBarView | 0.436 | 0.012 | 0.449 | |
| IncorporateDepmap | 0.024 | 0.000 | 0.025 | |
| KeggPathwayView | 3.624 | 0.104 | 6.195 | |
| MAView | 5.968 | 0.040 | 6.023 | |
| MapRatesView | 0.576 | 0.000 | 0.575 | |
| NormalizeBeta | 0.268 | 0.000 | 0.280 | |
| OmitCommonEssential | 0.000 | 0.000 | 0.001 | |
| RankView | 0.900 | 0.004 | 0.905 | |
| ReadBeta | 0.020 | 0.000 | 0.019 | |
| ReadRRA | 0.016 | 0.000 | 0.017 | |
| ReadsgRRA | 0.140 | 0.008 | 0.155 | |
| ResembleDepmap | 0.004 | 0.000 | 0.002 | |
| ScatterView | 1.556 | 0.016 | 1.578 | |
| Selector | 0.564 | 0.004 | 0.572 | |
| SquareView | 0.984 | 0.008 | 0.993 | |
| TransGeneID | 2.648 | 0.008 | 2.710 | |
| ViolinView | 1.808 | 0.004 | 1.817 | |
| VolcanoView | 2.580 | 0.008 | 2.597 | |
| arrangePathview | 7.144 | 0.312 | 9.202 | |
| countsummary | 0.008 | 0.000 | 0.005 | |
| enrich.GSE | 0.012 | 0.000 | 0.014 | |
| enrich.HGT | 1.568 | 0.008 | 1.596 | |
| enrich.ORT | 12.780 | 0.400 | 13.224 | |
| getGeneAnn | 0 | 0 | 0 | |
| getOrg | 0 | 0 | 0 | |
| getOrtAnn | 0 | 0 | 0 | |
| gsGetter | 0.248 | 0.000 | 0.280 | |
| hclustView | 0.160 | 0.000 | 0.157 | |
| mle.gene_summary | 0.036 | 0.000 | 0.036 | |
| normalize.loess | 0.224 | 0.000 | 0.226 | |
| readGMT | 0.636 | 0.000 | 0.639 | |
| rra.gene_summary | 0.032 | 0.000 | 0.030 | |
| rra.sgrna_summary | 0.292 | 0.004 | 0.294 | |
| sgRankView | 1.572 | 0.000 | 1.572 | |