Package: RCytoscape

Version: 1.0.1

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RCytoscape_1.0.1.tar.gz

StartedAt: 2011-03-31 07:27:33 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 07:34:50 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 437.3 seconds

RetCode: 0

Status:  OK

CheckDir: RCytoscape.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/RCytoscape.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCytoscape/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCytoscape’ version ‘1.0.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘RCytoscape’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘RCytoscape_unit_tests.R’
 OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘RCytoscape’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (RCytoscape)

name	user	system	elapsed
CytoscapeWindow	0.073	0.001	0.117
CytoscapeWindowClass-class	0.102	0.001	0.130
clearMsg	0.360	0.011	6.430
clearSelection	0.358	0.009	6.455
cy2.edge.names	0.029	0.000	0.030
destroyAllWindows	0.272	0.006	0.466
destroyWindow	0.068	0.001	0.097
displayGraph	0.332	0.007	6.672
dockPanel	0.105	0.003	0.220
eda	0.046	0.001	0.105
eda.names	0.058	0.002	0.208
firstNeighbors	0.055	0.001	0.181
floatPanel	0.107	0.003	0.326
getAllEdges	0.058	0.001	0.214
getAllNodes	0.070	0.001	0.211
getArrowShapes	0.074	0.002	0.195
getAttributeClassNames	0.058	0.001	0.234
getGraph	0.062	0.002	0.169
getLayoutNames	0.075	0.002	0.196
getLineStyles	0.075	0.002	0.190
getNodeShapes	0.074	0.002	0.265
getSelectedNodeCount	0.38	0.01	7.14
getSelectedNodes	0.387	0.010	5.771
getWindowCount	0.191	0.004	0.359
getWindowList	0.155	0.003	0.262
hidePanel	0.104	0.003	0.230
hideSelectedNodes	0.160	0.005	0.573
initEdgeAttribute	0.004	0.000	0.004
initNodeAttribute	0.004	0.000	0.004
layout	0.334	0.009	6.750
makeRandomGraph	0.021	0.001	0.027
makeSimpleGraph	0.059	0.001	0.067
msg	0.305	0.008	6.392
noa	0.045	0.001	0.083
noa.names	0.060	0.001	0.101
ping	0.072	0.002	0.114
redraw	0.070	0.001	0.104
selectNodes	0.135	0.004	0.204
sendEdgeAttributes	0.146	0.004	3.234
sendEdgeAttributesDirect	0.083	0.002	2.151
sendEdges	0.096	0.002	1.157
sendNodeAttributes	0.161	0.004	0.252
sendNodeAttributesDirect	0.088	0.003	0.165
sendNodes	0.082	0.002	0.200
setDefaultEdgeColor	0.385	0.011	6.803
setDefaultEdgeLineWidth	0.394	0.011	5.809
setDefaultNodeBorderColor	0.368	0.009	6.654
setDefaultNodeBorderWidth	0.376	0.010	6.777
setDefaultNodeColor	0.364	0.010	6.685
setDefaultNodeFontSize	0.367	0.009	6.760
setDefaultNodeLabelColor	0.380	0.010	6.735
setDefaultNodeShape	0.386	0.010	5.832
setDefaultNodeSize	0.413	0.012	3.933
setEdgeColorRule	0.108	0.002	2.163
setEdgeLineStyleRule	0.089	0.002	2.151
setEdgeSourceArrowColorRule	0.081	0.002	1.196
setEdgeSourceArrowRule	0.091	0.002	2.228
setEdgeTargetArrowColorRule	0.080	0.001	2.179
setEdgeTargetArrowRule	0.090	0.002	2.119
setEdgeTooltipRule	0.341	0.009	8.933
setGraph	0.062	0.001	0.090
setNodeBorderColorRule	0.149	0.004	4.184
setNodeColorRule	0.146	0.003	4.179
setNodeLabelRule	0.534	0.015	6.877
setNodeShapeRule	0.107	0.003	2.131
setNodeSizeRule	0.419	0.010	10.781
setNodeTooltipRule	0.402	0.009	12.802
setPosition	0.342	0.008	8.634
sfn	0.450	0.011	6.765
unhideAll	0.396	0.009	6.691
version	0.068	0.002	0.093