rtracklayer 0.1.5
Michael Lawrence
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rtracklayer | | Last Changed Rev: 30878 / Revision: 30951 | | Last Changed Date: 2008-04-07 07:15:31 -0700 (Mon, 07 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/rtracklayer.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'rtracklayer/DESCRIPTION' ... OK
* this is package 'rtracklayer' version '0.1.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rtracklayer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating rtracklayer-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating rtracklayer-manual.tex ... OK
* checking rtracklayer-manual.tex using pdflatex ... OK
* Installing *source* package 'rtracklayer' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: RCurl
** help
>>> Building/Updating help pages for package 'rtracklayer'
Formats: text html latex example
activeView-methods text html latex example
argoSession-class text html latex
argoView-class text html latex
basicTrackLine-class text html latex
browseGenome text html latex example
browserSession-class text html latex
browserSession-methods text html latex
browserView-class text html latex
browserView-methods text html latex example
browserViews-methods text html latex example
chrid-class text html latex
chrid-methods text html latex example
dataVals-methods text html latex example
export text html latex example
export.gff text html latex example
featChrom text html latex
genomeBrowsers text html latex
genomeSegment-class text html latex
genomeSegment-methods text html latex example
genomeSequence-methods text html latex
import text html latex example
import.gff text html latex example
laySequence-methods text html latex
layTrack-methods text html latex example
trackData text html latex
trackSet-class text html latex
trackSet-methods text html latex example
trackSets-class text html latex
trackSets-methods text html latex
tracks-methods text html latex
ucscSession-class text html latex
ucscTable text html latex
ucscTrackLine-class text html latex
ucscTrackModes-class text html latex
ucscTrackModes-methods text html latex example
ucscTrackSet-class text html latex
ucscView-class text html latex
wigTrackLine-class text html latex
** building package indices ...
* DONE (rtracklayer)