GenomeGraphs 0.99.1
Steffen Durinck
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomeGraphs | | Last Changed Rev: 30849 / Revision: 30951 | | Last Changed Date: 2008-04-04 12:23:11 -0700 (Fri, 04 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.1) / i386 | ERROR | skipped | skipped |
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* preparing 'GenomeGraphs':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst511693222
---------- Making package GenomeGraphs ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package GenomeGraphs for lazy loading
Loading required package: biomaRt
Loading required package: RCurl
Loading required package: grid
installing man source files
installing indices
not zipping data
installing help
Note: removing empty section \references
Note: removing empty section \references
>>> Building/Updating help pages for package 'GenomeGraphs'
Formats: text html latex example chm
BaseTrack-class text html latex example chm
DisplayPars-class text html latex example chm
DisplayPars text html latex example chm
ExonArray-class text html latex example chm
Gene-class text html latex example chm
GeneModel-class text html latex example chm
GeneRegion-class text html latex example chm
GenericArray-class text html latex example chm
GenomeAxis-class text html latex example chm
HighlightRegion-class text html latex example chm
Ideogram-class text html latex example chm
Legend-class text html latex example chm
MappedRead-class text html latex example chm
Segmentation-class text html latex example chm
Title-class text html latex example chm
Transcript-class text html latex example chm
TranscriptRegion-class text html latex example chm
cn text html latex example chm
exonProbePos text html latex example chm
gdObject-class text html latex example chm
gdPlot text html latex example chm
getPar text html latex example chm
ideogramTab text html latex example chm
intensity text html latex example chm
probestart text html latex example chm
segEnd text html latex example chm
segStart text html latex example chm
segments text html latex example chm
setPar text html latex example chm
unrData text html latex example chm
unrNProbes text html latex example chm
unrPositions text html latex example chm
yeastCons1 text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\GenomeGraphs\chm\GenomeGraphs.chm
Compile time: 0 minutes, 0 seconds
34 Topics
110 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\GenomeGraphs\chm\GenomeGraphs.chm, 42,435 bytes
Compression decreased file by 53,587 bytes.
adding MD5 sums
* DONE (GenomeGraphs)
* creating vignettes ... ERROR
Loading required package: biomaRt
Loading required package: RCurl
Loading required package: grid
V1
1 Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_49: DBI connect('database=ensembl_mart_49;host=martdb.ensembl.org;port=5316','anonymous',...) failed: Too many connections at /ebi/www/biomart/www/biomart-perl-06/lib/BioMart/Configuration/DBLocation.pm line 98
Error in getBM(c("structure_gene_stable_id", "structure_transcript_stable_id", :
Number of columns in the query result doesn't equal number of attributes in query. This is probably an internal error, please report.
Error: processing vignette 'GenomeGraphs.Rnw' failed with diagnostics:
Error in getBM(c("structure_gene_stable_id", "structure_transcript_stable_id", :
Number of columns in the query result doesn't equal number of attributes in query. This is probably an internal error, please report.
Execution halted