Back to Workflows build report for BioC 3.22

This page was generated on 2025-12-23 22:09 -0500 (Tue, 23 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4883
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 17/29HostnameOS / ArchINSTALLBUILD
methylationArrayAnalysis 1.34.0  (landing page)
Jovana Maksimovic
Snapshot Date: 2025-12-23 20:19 -0500 (Tue, 23 Dec 2025)
git_url: https://git.bioconductor.org/packages/methylationArrayAnalysis
git_branch: RELEASE_3_22
git_last_commit: 151d28d
git_last_commit_date: 2025-10-29 09:46:49 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  

BUILD results for methylationArrayAnalysis on nebbiolo2

To the developers/maintainers of the methylationArrayAnalysis package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: methylationArrayAnalysis
Version: 1.34.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
StartedAt: 2025-12-23 20:26:43 -0500 (Tue, 23 Dec 2025)
EndedAt: 2025-12-23 20:34:55 -0500 (Tue, 23 Dec 2025)
EllapsedTime: 491.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
###
##############################################################################
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* checking for file ‘methylationArrayAnalysis/DESCRIPTION’ ... OK
* preparing ‘methylationArrayAnalysis’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘methylationArrayAnalysis.Rmd’ using rmarkdown

Quitting from methylationArrayAnalysis.Rmd:514-523 [gentracks]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.local()`:
! querying UCSC is now based on the table identifier
---
Backtrace:
     ▆
  1. └─Gviz::UcscTrack(...)
  2.   └─Gviz:::.cacheTracks(...)
  3.     ├─Gviz::.doCache(...)
  4.     │ ├─BiocGenerics::eval(expression, envir = callEnv)
  5.     │ └─base::eval(expression, envir = callEnv)
  6.     │   └─base::eval(expression, envir = callEnv)
  7.     ├─rtracklayer::trackNames(ucscTableQuery(session))
  8.     └─rtracklayer::trackNames(ucscTableQuery(session))
  9.       └─rtracklayer (local) .local(object, ...)
 10.         └─base::.Defunct("tableNames", msg = "querying UCSC is now based on the table identifier")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics:
querying UCSC is now based on the table identifier
--- failed re-building ‘methylationArrayAnalysis.Rmd’

SUMMARY: processing the following file failed:
  ‘methylationArrayAnalysis.Rmd’

Error: Vignette re-building failed.
Execution halted