Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-08-04 11:48 -0400 (Mon, 04 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4823 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4565 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4603 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4544 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2326/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
xenLite 1.2.1 (landing page) Vincent Carey
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the xenLite package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/xenLite.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: xenLite |
Version: 1.2.1 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data xenLite |
StartedAt: 2025-08-01 05:36:21 -0000 (Fri, 01 Aug 2025) |
EndedAt: 2025-08-01 05:37:27 -0000 (Fri, 01 Aug 2025) |
EllapsedTime: 66.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data xenLite ### ############################################################################## ############################################################################## * checking for file ‘xenLite/DESCRIPTION’ ... OK * preparing ‘xenLite’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘xenLite.Rmd’ using rmarkdown Quitting from xenLite.Rmd:98-106 [dolung] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! NotImplemented: Support for codec 'zstd' not built In order to read this file, you will need to reinstall arrow with additional features enabled. Set one of these environment variables before installing: * Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd') * Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd') See https://arrow.apache.org/docs/r/articles/install.html for details --- Backtrace: ▆ 1. └─xenLite::restoreZipXenSPEP(pa) 2. ├─xenLite::loadGeometry(ans) 3. └─xenLite::loadGeometry(ans) 4. └─arrow::read_parquet(slot(x, "cellbounds_path"), as_data_frame = FALSE) 5. └─base::tryCatch(reader$ReadTable(), error = read_compressed_error) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'xenLite.Rmd' failed with diagnostics: NotImplemented: Support for codec 'zstd' not built In order to read this file, you will need to reinstall arrow with additional features enabled. Set one of these environment variables before installing: * Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd') * Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd') See https://arrow.apache.org/docs/r/articles/install.html for details --- failed re-building ‘xenLite.Rmd’ SUMMARY: processing the following file failed: ‘xenLite.Rmd’ Error: Vignette re-building failed. Execution halted