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This page was generated on 2025-10-16 11:41 -0400 (Thu, 16 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.6 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.7.5 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1948/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scviR 1.8.0  (landing page)
Vincent Carey
Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025)
git_url: https://git.bioconductor.org/packages/scviR
git_branch: RELEASE_3_21
git_last_commit: a4f406f
git_last_commit_date: 2025-04-15 13:10:58 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.7.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for scviR on kunpeng2

To the developers/maintainers of the scviR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scviR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: scviR
Version: 1.8.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data scviR
StartedAt: 2025-10-14 04:36:34 -0000 (Tue, 14 Oct 2025)
EndedAt: 2025-10-14 04:40:01 -0000 (Tue, 14 Oct 2025)
EllapsedTime: 207.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data scviR
###
##############################################################################
##############################################################################


* checking for file ‘scviR/DESCRIPTION’ ... OK
* preparing ‘scviR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘citeseq_tut.Rmd’ using rmarkdown
Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/.cache/R/basilisk/1.20.0/scviR/1.8.0/bsklenv

  added / updated specs:
    - python=3.10


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    python-3.10.19             |hcb9654d_1_cpython        12.6 MB  conda-forge
    ------------------------------------------------------------
                                           Total:        12.6 MB

The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8 
  ca-certificates    conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0 
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2 
  libexpat           conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0 
  libffi             conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0 
  libgcc             conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7 
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7 
  libgomp            conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7 
  liblzma            conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2 
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1 
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0 
  libuuid            conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0 
  libxcrypt          conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1 
  libzlib            conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2 
  ncurses            conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3 
  openssl            conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0 
  pip                conda-forge/noarch::pip-25.2-pyh8b19718_0 
  python             conda-forge/linux-aarch64::python-3.10.19-hcb9654d_1_cpython 
  readline           conda-forge/linux-aarch64::readline-8.2-h8382b9d_2 
  setuptools         conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0 
  tk                 conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102 
  tzdata             conda-forge/noarch::tzdata-2025b-h78e105d_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.11.3
    latest version: 25.9.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.11.3
    latest version: 25.9.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /home/biocbuild/.cache/R/basilisk/1.20.0/scviR/1.8.0/bsklenv

  added / updated specs:
    - numpy=1.24.4
    - pandas=1.5.3
    - python[version='3.10.*,3.10.*']


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-aarch64::libblas-3.9.0-37_haddc8a3_openblas 
  libcblas           conda-forge/linux-aarch64::libcblas-3.9.0-37_hd72aa62_openblas 
  libgfortran        conda-forge/linux-aarch64::libgfortran-15.2.0-he9431aa_7 
  libgfortran5       conda-forge/linux-aarch64::libgfortran5-15.2.0-h87db57e_7 
  liblapack          conda-forge/linux-aarch64::liblapack-3.9.0-37_h88aeb00_openblas 
  libopenblas        conda-forge/linux-aarch64::libopenblas-0.3.30-pthreads_h9d3fd7e_2 
  libstdcxx          conda-forge/linux-aarch64::libstdcxx-15.2.0-h3f4de04_7 
  libstdcxx-ng       conda-forge/linux-aarch64::libstdcxx-ng-15.2.0-hf1166c9_7 
  numpy              conda-forge/linux-aarch64::numpy-1.24.4-py310h7f380f4_0 
  pandas             conda-forge/linux-aarch64::pandas-1.5.3-py310hc3d6b01_1 
  python-dateutil    conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2 
  python_abi         conda-forge/noarch::python_abi-3.10-8_cp310 
  pytz               conda-forge/noarch::pytz-2025.2-pyhd8ed1ab_0 
  six                conda-forge/noarch::six-1.17.0-pyhe01879c_1 



Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ | done
Verifying transaction: - \ | / - \ | / - \ | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - \ done
Collecting anndata==0.10.1
  Using cached anndata-0.10.1-py3-none-any.whl.metadata (6.4 kB)
Collecting docrep==0.3.2
  Using cached docrep-0.3.2.tar.gz (33 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting flax==0.8.1
  Using cached flax-0.8.1-py3-none-any.whl.metadata (10 kB)
Collecting jax==0.4.23
  Using cached jax-0.4.23-py3-none-any.whl.metadata (24 kB)
Collecting jaxlib==0.4.23
  Using cached jaxlib-0.4.23-cp310-cp310-manylinux2014_aarch64.whl.metadata (2.1 kB)
Collecting optax==0.1.9
  Using cached optax-0.1.9-py3-none-any.whl.metadata (6.7 kB)
Collecting scipy==1.12.0
  Using cached scipy-1.12.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (112 kB)
Collecting scikit-learn==1.4.0
  Using cached scikit_learn-1.4.0-1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (11 kB)
Collecting rich==13.7.1
  Using cached rich-13.7.1-py3-none-any.whl.metadata (18 kB)
Collecting h5py==3.9.0
  Using cached h5py-3.9.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (2.5 kB)
Collecting torch==1.13.1
  Using cached torch-1.13.1-cp310-cp310-manylinux2014_aarch64.whl.metadata (23 kB)
Collecting lightning==2.1.4
  Using cached lightning-2.1.4-py3-none-any.whl.metadata (57 kB)
Collecting torchmetrics==0.11.0
  Using cached torchmetrics-0.11.0-py3-none-any.whl.metadata (16 kB)
Collecting tqdm==4.66.2
  Using cached tqdm-4.66.2-py3-none-any.whl.metadata (57 kB)
Collecting ml-collections==0.1.1
  Using cached ml_collections-0.1.1.tar.gz (77 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting mudata==0.2.3
  Using cached mudata-0.2.3-py3-none-any.whl.metadata (4.7 kB)
Collecting scvi-tools==1.1.2
  Using cached scvi_tools-1.1.2-py3-none-any.whl.metadata (12 kB)
Collecting scanpy==1.9.5
  Using cached scanpy-1.9.5-py3-none-any.whl.metadata (5.9 kB)
Collecting matplotlib==3.7.3
  Using cached matplotlib-3.7.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (5.7 kB)
Collecting scikit-misc==0.3.1
  Using cached scikit_misc-0.3.1.tar.gz (302 kB)
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'error'
  error: subprocess-exited-with-error
  
  × Preparing metadata (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [10 lines of output]
      + meson setup /home/biocbuild/tmp/pip-install-a0mucuz4/scikit-misc_2f9dd2332f9944e48143d76e5b41e732 /home/biocbuild/tmp/pip-install-a0mucuz4/scikit-misc_2f9dd2332f9944e48143d76e5b41e732/.mesonpy-v7y19ji_ -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/home/biocbuild/tmp/pip-install-a0mucuz4/scikit-misc_2f9dd2332f9944e48143d76e5b41e732/.mesonpy-v7y19ji_/meson-python-native-file.ini
      The Meson build system
      Version: 1.9.1
      Source dir: /home/biocbuild/tmp/pip-install-a0mucuz4/scikit-misc_2f9dd2332f9944e48143d76e5b41e732
      Build dir: /home/biocbuild/tmp/pip-install-a0mucuz4/scikit-misc_2f9dd2332f9944e48143d76e5b41e732/.mesonpy-v7y19ji_
      Build type: native build
      
      ../meson.build:5:11: ERROR: Command `/home/biocbuild/tmp/pip-install-a0mucuz4/scikit-misc_2f9dd2332f9944e48143d76e5b41e732/skmisc/_build_utils/version_please.py` failed with status 127.
      
      A full log can be found at /home/biocbuild/tmp/pip-install-a0mucuz4/scikit-misc_2f9dd2332f9944e48143d76e5b41e732/.mesonpy-v7y19ji_/meson-logs/meson-log.txt
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.

Quitting from citeseq_tut.Rmd:42-48 [doinit]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `setupBasiliskEnv()`:
! failed to install additional packages via pip
---
Backtrace:
    ▆
 1. └─scviR::getCiteseq5k10kPbmcs()
 2.   └─scviR::anndataR()
 3.     └─basilisk::basiliskStart(bsklenv)
 4.       └─basilisk::obtainEnvironmentPath(env)
 5.         └─basilisk::setupBasiliskEnv(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'citeseq_tut.Rmd' failed with diagnostics:
failed to install additional packages via pip
--- failed re-building ‘citeseq_tut.Rmd’

--- re-building ‘compch12.Rmd’ using rmarkdown
Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/.cache/R/basilisk/1.20.0/scviR/1.8.0/bsklenv

  added / updated specs:
    - python=3.10


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8 
  ca-certificates    conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0 
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2 
  libexpat           conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0 
  libffi             conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0 
  libgcc             conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7 
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7 
  libgomp            conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7 
  liblzma            conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2 
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1 
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0 
  libuuid            conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0 
  libxcrypt          conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1 
  libzlib            conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2 
  ncurses            conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3 
  openssl            conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0 
  pip                conda-forge/noarch::pip-25.2-pyh8b19718_0 
  python             conda-forge/linux-aarch64::python-3.10.19-hcb9654d_1_cpython 
  readline           conda-forge/linux-aarch64::readline-8.2-h8382b9d_2 
  setuptools         conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0 
  tk                 conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102 
  tzdata             conda-forge/noarch::tzdata-2025b-h78e105d_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.11.3
    latest version: 25.9.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.11.3
    latest version: 25.9.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /home/biocbuild/.cache/R/basilisk/1.20.0/scviR/1.8.0/bsklenv

  added / updated specs:
    - numpy=1.24.4
    - pandas=1.5.3
    - python[version='3.10.*,3.10.*']


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-aarch64::libblas-3.9.0-37_haddc8a3_openblas 
  libcblas           conda-forge/linux-aarch64::libcblas-3.9.0-37_hd72aa62_openblas 
  libgfortran        conda-forge/linux-aarch64::libgfortran-15.2.0-he9431aa_7 
  libgfortran5       conda-forge/linux-aarch64::libgfortran5-15.2.0-h87db57e_7 
  liblapack          conda-forge/linux-aarch64::liblapack-3.9.0-37_h88aeb00_openblas 
  libopenblas        conda-forge/linux-aarch64::libopenblas-0.3.30-pthreads_h9d3fd7e_2 
  libstdcxx          conda-forge/linux-aarch64::libstdcxx-15.2.0-h3f4de04_7 
  libstdcxx-ng       conda-forge/linux-aarch64::libstdcxx-ng-15.2.0-hf1166c9_7 
  numpy              conda-forge/linux-aarch64::numpy-1.24.4-py310h7f380f4_0 
  pandas             conda-forge/linux-aarch64::pandas-1.5.3-py310hc3d6b01_1 
  python-dateutil    conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2 
  python_abi         conda-forge/noarch::python_abi-3.10-8_cp310 
  pytz               conda-forge/noarch::pytz-2025.2-pyhd8ed1ab_0 
  six                conda-forge/noarch::six-1.17.0-pyhe01879c_1 



Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ | done
Verifying transaction: - \ | / - \ | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | done
Collecting anndata==0.10.1
  Using cached anndata-0.10.1-py3-none-any.whl.metadata (6.4 kB)
Collecting docrep==0.3.2
  Using cached docrep-0.3.2.tar.gz (33 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting flax==0.8.1
  Using cached flax-0.8.1-py3-none-any.whl.metadata (10 kB)
Collecting jax==0.4.23
  Using cached jax-0.4.23-py3-none-any.whl.metadata (24 kB)
Collecting jaxlib==0.4.23
  Using cached jaxlib-0.4.23-cp310-cp310-manylinux2014_aarch64.whl.metadata (2.1 kB)
Collecting optax==0.1.9
  Using cached optax-0.1.9-py3-none-any.whl.metadata (6.7 kB)
Collecting scipy==1.12.0
  Using cached scipy-1.12.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (112 kB)
Collecting scikit-learn==1.4.0
  Using cached scikit_learn-1.4.0-1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (11 kB)
Collecting rich==13.7.1
  Using cached rich-13.7.1-py3-none-any.whl.metadata (18 kB)
Collecting h5py==3.9.0
  Using cached h5py-3.9.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (2.5 kB)
Collecting torch==1.13.1
  Using cached torch-1.13.1-cp310-cp310-manylinux2014_aarch64.whl.metadata (23 kB)
Collecting lightning==2.1.4
  Using cached lightning-2.1.4-py3-none-any.whl.metadata (57 kB)
Collecting torchmetrics==0.11.0
  Using cached torchmetrics-0.11.0-py3-none-any.whl.metadata (16 kB)
Collecting tqdm==4.66.2
  Using cached tqdm-4.66.2-py3-none-any.whl.metadata (57 kB)
Collecting ml-collections==0.1.1
  Using cached ml_collections-0.1.1.tar.gz (77 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting mudata==0.2.3
  Using cached mudata-0.2.3-py3-none-any.whl.metadata (4.7 kB)
Collecting scvi-tools==1.1.2
  Using cached scvi_tools-1.1.2-py3-none-any.whl.metadata (12 kB)
Collecting scanpy==1.9.5
  Using cached scanpy-1.9.5-py3-none-any.whl.metadata (5.9 kB)
Collecting matplotlib==3.7.3
  Using cached matplotlib-3.7.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (5.7 kB)
Collecting scikit-misc==0.3.1
  Using cached scikit_misc-0.3.1.tar.gz (302 kB)
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'error'
  error: subprocess-exited-with-error
  
  × Preparing metadata (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [10 lines of output]
      + meson setup /home/biocbuild/tmp/pip-install-bowt3ai_/scikit-misc_ee2e6fdf22c64fc2a7e99648621f024e /home/biocbuild/tmp/pip-install-bowt3ai_/scikit-misc_ee2e6fdf22c64fc2a7e99648621f024e/.mesonpy-jd6hnjhw -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/home/biocbuild/tmp/pip-install-bowt3ai_/scikit-misc_ee2e6fdf22c64fc2a7e99648621f024e/.mesonpy-jd6hnjhw/meson-python-native-file.ini
      The Meson build system
      Version: 1.9.1
      Source dir: /home/biocbuild/tmp/pip-install-bowt3ai_/scikit-misc_ee2e6fdf22c64fc2a7e99648621f024e
      Build dir: /home/biocbuild/tmp/pip-install-bowt3ai_/scikit-misc_ee2e6fdf22c64fc2a7e99648621f024e/.mesonpy-jd6hnjhw
      Build type: native build
      
      ../meson.build:5:11: ERROR: Command `/home/biocbuild/tmp/pip-install-bowt3ai_/scikit-misc_ee2e6fdf22c64fc2a7e99648621f024e/skmisc/_build_utils/version_please.py` failed with status 127.
      
      A full log can be found at /home/biocbuild/tmp/pip-install-bowt3ai_/scikit-misc_ee2e6fdf22c64fc2a7e99648621f024e/.mesonpy-jd6hnjhw/meson-logs/meson-log.txt
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.

Quitting from compch12.Rmd:49-53 [getdat2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `setupBasiliskEnv()`:
! failed to install additional packages via pip
---
Backtrace:
    ▆
 1. └─scviR::getTotalVI5k10kAdata()
 2.   └─scviR::anndataR()
 3.     └─basilisk::basiliskStart(bsklenv)
 4.       └─basilisk::obtainEnvironmentPath(env)
 5.         └─basilisk::setupBasiliskEnv(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'compch12.Rmd' failed with diagnostics:
failed to install additional packages via pip
--- failed re-building ‘compch12.Rmd’

--- re-building ‘scviR.Rmd’ using rmarkdown
--- finished re-building ‘scviR.Rmd’

SUMMARY: processing the following files failed:
  ‘citeseq_tut.Rmd’ ‘compch12.Rmd’

Error: Vignette re-building failed.
Execution halted