Multiple platform build/check report for BioC 3.22 - BUILD results for rols on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4902
lconway	macOS 12.7.6 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4692
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4638
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for rols on kjohnson3

To the developers/maintainers of the rols package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rols.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: rols

Version: 3.6.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rols

StartedAt: 2025-11-02 17:33:33 -0500 (Sun, 02 Nov 2025)

EndedAt: 2025-11-02 17:33:38 -0500 (Sun, 02 Nov 2025)

EllapsedTime: 5.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rols
###
##############################################################################
##############################################################################


* checking for file ‘rols/DESCRIPTION’ ... OK
* preparing ‘rols’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘rols.Rmd’ using rmarkdown

Quitting from rols.Rmd:20-26 [env]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'X' in selecting a method for function 'lapply': error in evaluating the argument 'X' in selecting a method for function 'lapply': HTTP 404 Not Found.
---
Backtrace:
     ▆
  1. ├─base::suppressMessages(nonto <- length(ol <- Ontologies()))
  2. │ └─base::withCallingHandlers(...)
  3. ├─rols::Ontologies()
  4. ├─rols::Ontologies()
  5. │ └─rols:::makeOntologies()
  6. │   ├─rols:::.Ontologies(...)
  7. │   │ └─methods::new(`<chr>`, ...)
  8. │   │   ├─methods::initialize(value, ...)
  9. │   │   └─methods::initialize(value, ...)
 10. │   ├─base::lapply(ols_requests(url, "ontologies"), ontologyFromJson)
 11. │   └─rols:::ols_requests(url, "ontologies")
 12. │     ├─base::unlist(...)
 13. │     ├─base::lapply(...)
 14. │     └─httr2::req_perform_iterative(...)
 15. │       ├─base::tryCatch(...)
 16. │       │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 17. │       │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 18. │       │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 19. │       ├─rlang::try_fetch(...)
 20. │       │ └─base::withCallingHandlers(...)
 21. │       └─httr2::req_perform(req, path = get_path(i), mock = mock)
 22. │         └─httr2:::handle_resp(req, resp, error_call = error_call)
 23. │           └─rlang::cnd_signal(cnd)
 24. │             └─rlang:::signal_abort(cnd)
 25. │               └─base::signalCondition(cnd)
 26. ├─base (local) `<fn>`(`<ht2__404>`)
 27. └─base::.handleSimpleError(...)
 28.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rols.Rmd' failed with diagnostics:
error in evaluating the argument 'X' in selecting a method for function 'lapply': error in evaluating the argument 'X' in selecting a method for function 'lapply': HTTP 404 Not Found.
--- failed re-building ‘rols.Rmd’

SUMMARY: processing the following file failed:
  ‘rols.Rmd’

Error: Vignette re-building failed.
Execution halted