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This page was generated on 2025-12-22 12:07 -0500 (Mon, 22 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4883
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4673
kjohnson1macOS 13.7.5 Venturaarm644.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" 4607
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4671
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1482/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nullranges 1.16.3  (landing page)
Michael Love
Snapshot Date: 2025-12-18 13:45 -0500 (Thu, 18 Dec 2025)
git_url: https://git.bioconductor.org/packages/nullranges
git_branch: RELEASE_3_22
git_last_commit: 9674b25
git_last_commit_date: 2025-12-15 12:25:58 -0500 (Mon, 15 Dec 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.7.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for nullranges on taishan

To the developers/maintainers of the nullranges package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: nullranges
Version: 1.16.3
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings nullranges_1.16.3.tar.gz
StartedAt: 2025-12-19 12:34:42 -0000 (Fri, 19 Dec 2025)
EndedAt: 2025-12-19 12:41:56 -0000 (Fri, 19 Dec 2025)
EllapsedTime: 433.9 seconds
RetCode: 0
Status:   OK  
CheckDir: nullranges.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings nullranges_1.16.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/nullranges.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘nullranges/DESCRIPTION’ ... OK
* this is package ‘nullranges’ version ‘1.16.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nullranges’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
as_MatchedGInteractions: no visible global function definition for
  ‘coerceToRanges’
as_MatchedGRanges: no visible global function definition for
  ‘coerceToRanges’
Undefined global functions or variables:
  coerceToRanges
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
plotPropensity 3.279  0.148    6.17
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/nullranges.Rcheck/00check.log’
for details.


Installation output

nullranges.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL nullranges
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘nullranges’ ...
** this is package ‘nullranges’ version ‘1.16.3’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nullranges)

Tests output

nullranges.Rcheck/tests/testthat.Rout


R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(nullranges)
> 
> test_check("nullranges")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
> 
> proc.time()
   user  system elapsed 
 21.775   0.702  25.725 

Example timings

nullranges.Rcheck/nullranges-Ex.timings

nameusersystemelapsed
MatchedDataFrame2.6030.1603.606
MatchedGInteractions0.6910.0320.750
MatchedGRanges0.5520.0050.939
bootRanges0.4030.0040.752
combnCov0.0050.0000.005
covariates0.1710.0120.183
focal0.8440.0611.014
indices0.1500.0320.281
makeExampleMatchedDataSet0.6790.0120.726
matchRanges1.5180.0311.561
matched0.1380.0160.154
matchedClass0.1710.0000.171
matchedData0.1550.0040.160
matchitToMatched0.0010.0000.000
method0.1380.0000.138
oneRegionSegment0.5720.0240.598
overview0.2050.0080.213
plotCovariate4.1420.1324.534
plotPropensity3.2790.1486.170
plotSegment2.5460.0832.884
pool0.1550.0040.159
reduceSegment0.3080.0000.309
segmentDensity0.4980.0070.507
unmatched0.1750.0280.316
withReplacement0.1390.0000.139