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This page was generated on 2026-02-24 11:57 -0500 (Tue, 24 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4891
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1122/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
knowYourCG 1.6.3  (landing page)
Goldberg David
Snapshot Date: 2026-02-23 13:45 -0500 (Mon, 23 Feb 2026)
git_url: https://git.bioconductor.org/packages/knowYourCG
git_branch: RELEASE_3_22
git_last_commit: ca128fc
git_last_commit_date: 2026-01-07 23:20:04 -0500 (Wed, 07 Jan 2026)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
See other builds for knowYourCG in R Universe.

BUILD results for knowYourCG on nebbiolo2

To the developers/maintainers of the knowYourCG package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/knowYourCG.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: knowYourCG
Version: 1.6.3
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 knowYourCG
StartedAt: 2026-02-23 18:20:17 -0500 (Mon, 23 Feb 2026)
EndedAt: 2026-02-23 18:22:55 -0500 (Mon, 23 Feb 2026)
EllapsedTime: 158.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 knowYourCG
###
##############################################################################
##############################################################################


* checking for file ‘knowYourCG/DESCRIPTION’ ... OK
* preparing ‘knowYourCG’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Array.Rmd’ using rmarkdown
Could not fetch https://maxcdn.bootstrapcdn.com/font-awesome/4.4.0/css/font-awesome.min.css
HttpExceptionRequest Request {
  host                 = "maxcdn.bootstrapcdn.com"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/font-awesome/4.4.0/css/font-awesome.min.css"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 (InternalException (HostCannotConnect "maxcdn.bootstrapcdn.com" [Network.Socket.connect: <socket: 14>: does not exist (Network unreachable),Network.Socket.connect: <socket: 14>: does not exist (Network unreachable),Network.Socket.connect: <socket: 14>: does not exist (Connection refused),Network.Socket.connect: <socket: 14>: does not exist (Connection refused)]))
Error: processing vignette 'Array.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘Array.Rmd’

--- re-building ‘Continuous.Rmd’ using rmarkdown
Could not fetch https://maxcdn.bootstrapcdn.com/font-awesome/4.4.0/css/font-awesome.min.css
HttpExceptionRequest Request {
  host                 = "maxcdn.bootstrapcdn.com"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/font-awesome/4.4.0/css/font-awesome.min.css"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 (InternalException (HostCannotConnect "maxcdn.bootstrapcdn.com" [Network.Socket.connect: <socket: 14>: does not exist (Network unreachable),Network.Socket.connect: <socket: 14>: does not exist (Network unreachable),Network.Socket.connect: <socket: 14>: does not exist (Connection refused),Network.Socket.connect: <socket: 14>: does not exist (Connection refused)]))
Error: processing vignette 'Continuous.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘Continuous.Rmd’

--- re-building ‘Sequencing.Rmd’ using rmarkdown
trying URL 'https://zenodo.org/records/18175656/files/ChromHMM.20220414.cm'
Content type 'application/octet-stream' length 877986 bytes (857 KB)
==================================================
downloaded 857 KB

trying URL 'https://zenodo.org/records/18176004/files/mm10_f3_10cells.cg'
Content type 'application/octet-stream' length 11959677 bytes (11.4 MB)
==================================================
downloaded 11.4 MB

Could not fetch https://maxcdn.bootstrapcdn.com/font-awesome/4.4.0/css/font-awesome.min.css
HttpExceptionRequest Request {
  host                 = "maxcdn.bootstrapcdn.com"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/font-awesome/4.4.0/css/font-awesome.min.css"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 (InternalException (HostCannotConnect "maxcdn.bootstrapcdn.com" [Network.Socket.connect: <socket: 15>: does not exist (Network unreachable),Network.Socket.connect: <socket: 15>: does not exist (Network unreachable),Network.Socket.connect: <socket: 15>: does not exist (Connection refused),Network.Socket.connect: <socket: 15>: does not exist (Connection refused)]))
Error: processing vignette 'Sequencing.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘Sequencing.Rmd’

--- re-building ‘visualization.Rmd’ using rmarkdown
Could not fetch https://maxcdn.bootstrapcdn.com/font-awesome/4.4.0/css/font-awesome.min.css
HttpExceptionRequest Request {
  host                 = "maxcdn.bootstrapcdn.com"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/font-awesome/4.4.0/css/font-awesome.min.css"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 (InternalException (HostCannotConnect "maxcdn.bootstrapcdn.com" [Network.Socket.connect: <socket: 15>: does not exist (Network unreachable),Network.Socket.connect: <socket: 15>: does not exist (Network unreachable),Network.Socket.connect: <socket: 15>: does not exist (Connection refused),Network.Socket.connect: <socket: 15>: does not exist (Connection refused)]))
Error: processing vignette 'visualization.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘visualization.Rmd’

SUMMARY: processing the following files failed:
  ‘Array.Rmd’ ‘Continuous.Rmd’ ‘Sequencing.Rmd’ ‘visualization.Rmd’

Error: Vignette re-building failed.
Execution halted