Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-08-04 11:47 -0400 (Mon, 04 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4823 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4565 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4603 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4544 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1041/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
immunogenViewer 1.2.0 (landing page) Katharina Waury
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the immunogenViewer package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunogenViewer.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: immunogenViewer |
Version: 1.2.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunogenViewer |
StartedAt: 2025-08-01 01:42:20 -0000 (Fri, 01 Aug 2025) |
EndedAt: 2025-08-01 01:43:02 -0000 (Fri, 01 Aug 2025) |
EllapsedTime: 42.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunogenViewer ### ############################################################################## ############################################################################## * checking for file ‘immunogenViewer/DESCRIPTION’ ... OK * preparing ‘immunogenViewer’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘immunogenViewer_vignette.Rmd’ using rmarkdown Quitting from immunogenViewer_vignette.Rmd:77-81 [get-features] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! lexical error: invalid char in json text. <!DOCTYPE html> <html lang="en" (right here) ------^ --- Backtrace: ▆ 1. └─immunogenViewer::getProteinFeatures("Q9NZC2") 2. └─immunogenViewer:::accessPredictProtein(uniprot) 3. └─jsonlite::fromJSON(httr::content(response, "text", encoding = "UTF-8")) 4. └─jsonlite:::parse_and_simplify(...) 5. └─jsonlite:::parseJSON(txt, bigint_as_char) 6. └─jsonlite:::parse_string(txt, bigint_as_char) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'immunogenViewer_vignette.Rmd' failed with diagnostics: lexical error: invalid char in json text. <!DOCTYPE html> <html lang="en" (right here) ------^ --- failed re-building ‘immunogenViewer_vignette.Rmd’ SUMMARY: processing the following file failed: ‘immunogenViewer_vignette.Rmd’ Error: Vignette re-building failed. Execution halted