Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2025-08-04 11:42 -0400 (Mon, 04 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4823
palomino7Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4565
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4603
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4544
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4579
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 717/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fcScan 1.22.0  (landing page)
Pierre Khoueiry Abdullah El-Kurdi
Snapshot Date: 2025-07-31 13:40 -0400 (Thu, 31 Jul 2025)
git_url: https://git.bioconductor.org/packages/fcScan
git_branch: RELEASE_3_21
git_last_commit: 920191b
git_last_commit_date: 2025-04-15 11:48:51 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  

CHECK results for fcScan on palomino7

To the developers/maintainers of the fcScan package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: fcScan
Version: 1.22.0
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fcScan.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings fcScan_1.22.0.tar.gz
StartedAt: 2025-08-01 02:13:30 -0400 (Fri, 01 Aug 2025)
EndedAt: 2025-08-01 02:30:10 -0400 (Fri, 01 Aug 2025)
EllapsedTime: 999.7 seconds
RetCode: 0
Status:   OK  
CheckDir: fcScan.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fcScan.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings fcScan_1.22.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/fcScan.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'fcScan/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fcScan' version '1.22.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fcScan' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
getCluster 0.22      0   12.03
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

fcScan.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL fcScan
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'fcScan' ...
** this is package 'fcScan' version '1.22.0'
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcScan)

Tests output

fcScan.Rcheck/tests/runTests.Rout


R version 4.5.1 (2025-06-13 ucrt) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.25041 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 12.14756 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.98941 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.84131 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.34469 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.34058 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.33724 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.32054 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.24766 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.98307 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.09273 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.27136 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.2567 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.29052 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 12.3246 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 12.8485 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 26.27642 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 1.17797 mins
6  entries loaded 
Running getCluster using 1 threads
Time difference of 32.07926 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 15.25486 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 18.30621 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 14.52025 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 21.47511 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.04943 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.36006 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 14.61539 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.5813 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.41134 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 16.71839 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 14.9365 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.38416 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.10053 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.59393 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 14.3107 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.62854 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 14.87669 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.3198 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 16.06424 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 16.04064 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 16.31024 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 16.06256 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 16.25583 secs


RUNIT TEST PROTOCOL -- Fri Aug  1 02:29:44 2025 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  14.98    1.23  731.79

Example timings

fcScan.Rcheck/fcScan-Ex.timings

nameusersystemelapsed
getCluster 0.22 0.0012.03