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This page was generated on 2025-08-04 11:40 -0400 (Mon, 04 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4823
palomino7Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4565
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4603
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4544
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4579
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 355/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chromstaR 1.34.0  (landing page)
Aaron Taudt
Snapshot Date: 2025-07-31 13:40 -0400 (Thu, 31 Jul 2025)
git_url: https://git.bioconductor.org/packages/chromstaR
git_branch: RELEASE_3_21
git_last_commit: 097ad42
git_last_commit_date: 2025-04-15 11:02:56 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.2 LTS) / x86_64  ERROR    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
merida1macOS 12.7.5 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  ERROR    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  ERROR    ERROR  skipped


INSTALL results for chromstaR on nebbiolo1

To the developers/maintainers of the chromstaR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: chromstaR
Version: 1.34.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL chromstaR
StartedAt: 2025-08-03 15:31:50 -0400 (Sun, 03 Aug 2025)
EndedAt: 2025-08-03 15:31:52 -0400 (Sun, 03 Aug 2025)
EllapsedTime: 2.3 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL chromstaR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘chromstaR’ ...
** this is package ‘chromstaR’ version ‘1.34.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security  -c R_interface.cpp -o R_interface.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security  -c densities.cpp -o densities.o
densities.cpp: In constructor ‘ZiNB::ZiNB(int*, int, double, double, double)’:
densities.cpp:25:66: error: expected primary-expression before ‘double’
   25 |                 this->lxfactorials = (double*) Calloc(max_obs+1, double);
      |                                                                  ^~~~~~
densities.cpp:25:48: error: ‘Calloc’ was not declared in this scope; did you mean ‘calloc’?
   25 |                 this->lxfactorials = (double*) Calloc(max_obs+1, double);
      |                                                ^~~~~~
      |                                                calloc
densities.cpp: In destructor ‘virtual ZiNB::~ZiNB()’:
densities.cpp:40:17: error: ‘Free’ was not declared in this scope; did you mean ‘free’?
   40 |                 Free(this->lxfactorials);
      |                 ^~~~
      |                 free
densities.cpp: In constructor ‘NegativeBinomial::NegativeBinomial(int*, int, double, double)’:
densities.cpp:347:66: error: expected primary-expression before ‘double’
  347 |                 this->lxfactorials = (double*) Calloc(max_obs+1, double);
      |                                                                  ^~~~~~
densities.cpp:347:48: error: ‘Calloc’ was not declared in this scope; did you mean ‘calloc’?
  347 |                 this->lxfactorials = (double*) Calloc(max_obs+1, double);
      |                                                ^~~~~~
      |                                                calloc
densities.cpp: In destructor ‘virtual NegativeBinomial::~NegativeBinomial()’:
densities.cpp:362:17: error: ‘Free’ was not declared in this scope; did you mean ‘free’?
  362 |                 Free(this->lxfactorials);
      |                 ^~~~
      |                 free
densities.cpp: In member function ‘virtual void MVCopulaApproximation::calc_logdensities(double*)’:
densities.cpp:881:50: error: expected primary-expression before ‘double’
  881 |         double* z = (double*) Calloc(this->Nmod, double);
      |                                                  ^~~~~~
densities.cpp:881:31: error: ‘Calloc’ was not declared in this scope; did you mean ‘calloc’?
  881 |         double* z = (double*) Calloc(this->Nmod, double);
      |                               ^~~~~~
      |                               calloc
densities.cpp:976:9: error: ‘Free’ was not declared in this scope; did you mean ‘free’?
  976 |         Free(z);
      |         ^~~~
      |         free
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:209: densities.o] Error 1
ERROR: compilation failed for package ‘chromstaR’
* removing ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/chromstaR’