Back to Multiple platform build/check report for BioC 3.21:   simplified   long
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-08-04 11:41 -0400 (Mon, 04 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4823
palomino7Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4565
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4603
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4544
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4579
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 233/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bluster 1.18.0  (landing page)
Aaron Lun
Snapshot Date: 2025-07-31 13:40 -0400 (Thu, 31 Jul 2025)
git_url: https://git.bioconductor.org/packages/bluster
git_branch: RELEASE_3_21
git_last_commit: d958b33
git_last_commit_date: 2025-04-15 12:04:57 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


BUILD results for bluster on palomino7

To the developers/maintainers of the bluster package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bluster.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: bluster
Version: 1.18.0
Command: chmod a+r bluster -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data bluster
StartedAt: 2025-07-31 17:53:16 -0400 (Thu, 31 Jul 2025)
EndedAt: 2025-07-31 17:55:43 -0400 (Thu, 31 Jul 2025)
EllapsedTime: 146.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r bluster -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data bluster
###
##############################################################################
##############################################################################


* checking for file 'bluster/DESCRIPTION' ... OK
* preparing 'bluster':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'clusterRows.Rmd' using rmarkdown

Quitting from clusterRows.Rmd:122-126 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'mbkmeans'
---
Backtrace:
    ▆
 1. ├─bluster::clusterRows(mat, MbkmeansParam(20))
 2. ├─bluster::clusterRows(mat, MbkmeansParam(20))
 3. └─base::loadNamespace(x)
 4.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 5.     └─base (local) withOneRestart(expr, restarts[[1L]])
 6.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'clusterRows.Rmd' failed with diagnostics:
there is no package called 'mbkmeans'
--- failed re-building 'clusterRows.Rmd'

--- re-building 'diagnostics.Rmd' using rmarkdown
--- finished re-building 'diagnostics.Rmd'

SUMMARY: processing the following file failed:
  'clusterRows.Rmd'

Error: Vignette re-building failed.
Execution halted