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This page was generated on 2025-04-22 13:17 -0400 (Tue, 22 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4831
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4573
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
kjohnson3macOS 13.7.1 Venturaarm644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4553
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4570
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 207/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.14.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-04-21 13:40 -0400 (Mon, 21 Apr 2025)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: RELEASE_3_21
git_last_commit: a7f0a0f
git_last_commit_date: 2025-04-15 12:42:50 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  YES
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  YES
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  YES
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  

CHECK results for biodbHmdb on kjohnson3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.14.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz
StartedAt: 2025-04-21 18:22:38 -0400 (Mon, 21 Apr 2025)
EndedAt: 2025-04-21 18:23:00 -0400 (Mon, 21 Apr 2025)
EllapsedTime: 22.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.0 RC (2025-04-04 r88126)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.14.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-04-21 18:22:53.203][biodb::testContext]
biodb.INFO [2025-04-21 18:22:53.204][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 18:22:53.205][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-04-21 18:22:53.205][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 18:22:53.205][biodb::testContext]
biodb.INFO [2025-04-21 18:22:53.206][biodb::testThat]
biodb.INFO [2025-04-21 18:22:53.206][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-04-21 18:22:53.206][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:53.206][biodb::testThat]
biodb.INFO [2025-04-21 18:22:53.248][biodb::testContext]
biodb.INFO [2025-04-21 18:22:53.249][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 18:22:53.249][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-04-21 18:22:53.249][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 18:22:53.250][biodb::testContext]
biodb.INFO [2025-04-21 18:22:53.254][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-21 18:22:53.254][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-21 18:22:53.258][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 18:22:53.258][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-21 18:22:53.258][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-21 18:22:53.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.260][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-21 18:22:53.270][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-21 18:22:53.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.271][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-21 18:22:53.271][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-21 18:22:53.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.272][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-21 18:22:53.272][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-21 18:22:53.273][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-21 18:22:53.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.274][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-21 18:22:53.274][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-21 18:22:53.274][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-21 18:22:53.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.275][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-21 18:22:53.276][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-21 18:22:53.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.277][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-21 18:22:53.277][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-21 18:22:53.277][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-21 18:22:53.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.278][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-21 18:22:53.278][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-21 18:22:53.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.280][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-21 18:22:53.280][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-21 18:22:53.280][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-21 18:22:53.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.282][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-21 18:22:53.282][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-21 18:22:53.282][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-21 18:22:53.283][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-21 18:22:53.283][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-21 18:22:53.283][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-21 18:22:53.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.284][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-21 18:22:53.284][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-21 18:22:53.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.285][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-21 18:22:53.286][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-21 18:22:53.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.287][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-21 18:22:53.287][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-21 18:22:53.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.288][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-21 18:22:53.288][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-21 18:22:53.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.289][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-21 18:22:53.289][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-21 18:22:53.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.290][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-21 18:22:53.290][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-21 18:22:53.301][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-21 18:22:53.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.302][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-21 18:22:53.302][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-21 18:22:53.311][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-21 18:22:53.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.314][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-21 18:22:53.327][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.332][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-21 18:22:53.332][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.333][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:53.333][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.333][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.333][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.334][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.334][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 18:22:53.334][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:53.334][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.335][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-21 18:22:53.335][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:53.335][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.335][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.336][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 18:22:53.336][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 18:22:53.336][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 18:22:53.336][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 18:22:53.336][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 18:22:53.336][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:53.336][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:53.337][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:53.337][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:53.337][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:53.337][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:53.338][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.338][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.338][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:53.338][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:53.341][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.342][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.342][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-21 18:22:53.342][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.343][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 18:22:53.343][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.343][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:53.344][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.344][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.344][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.344][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.345][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 18:22:53.345][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:53.345][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.345][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-21 18:22:53.346][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:53.346][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.346][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.346][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 18:22:53.346][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 18:22:53.346][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 18:22:53.346][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 18:22:53.346][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 18:22:53.347][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:53.347][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:53.347][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:53.347][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:53.348][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:53.348][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:53.348][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.348][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.349][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:53.349][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:53.349][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.349][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.350][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-21 18:22:53.350][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.351][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-21 18:22:53.351][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.351][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:53.351][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.352][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.352][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.352][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.353][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 18:22:53.353][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:53.353][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.353][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-21 18:22:53.354][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:53.354][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.354][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.354][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.355][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:53.355][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:53.355][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:53.355][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:53.356][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:53.356][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:53.356][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.356][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.357][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:53.357][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:53.357][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.357][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.358][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-21 18:22:53.358][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.358][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 18:22:53.359][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.359][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:53.359][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.359][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.360][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.360][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.360][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 18:22:53.360][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:53.361][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.361][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-21 18:22:53.361][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:53.361][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.362][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.362][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.362][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:53.362][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:53.363][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:53.363][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:53.363][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:53.363][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:53.364][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.364][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.364][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:53.364][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:53.364][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.365][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.366][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 18:22:53.367][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.397][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-21 18:22:53.399][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-21 18:22:53.402][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-21 18:22:53.402][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-21 18:22:53.402][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-21 18:22:53.403][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 18:22:53.403][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-21 18:22:53.403][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-21 18:22:53.404][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-21 18:22:53.404][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 18:22:53.405][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 18:22:53.405][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-21 18:22:53.406][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-21 18:22:53.406][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-21 18:22:53.406][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-21 18:22:53.407][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 18:22:53.407][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-21 18:22:53.407][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-21 18:22:53.408][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-21 18:22:53.408][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-21 18:22:53.409][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-21 18:22:53.409][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-21 18:22:53.410][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-21 18:22:53.410][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-21 18:22:53.410][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-21 18:22:53.411][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-21 18:22:53.411][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-21 18:22:53.412][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-21 18:22:53.412][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-21 18:22:53.413][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-21 18:22:53.413][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-21 18:22:53.413][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-21 18:22:53.414][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-21 18:22:53.414][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-21 18:22:53.415][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-21 18:22:53.415][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-21 18:22:53.416][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-21 18:22:53.416][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-21 18:22:53.417][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-21 18:22:53.417][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-21 18:22:53.418][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-21 18:22:53.418][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-21 18:22:53.419][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-21 18:22:53.419][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-21 18:22:53.419][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-21 18:22:53.420][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-21 18:22:53.420][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-21 18:22:53.421][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-21 18:22:53.421][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-21 18:22:53.422][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-21 18:22:53.422][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-21 18:22:53.422][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-21 18:22:53.423][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-21 18:22:53.423][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-21 18:22:53.423][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-21 18:22:53.424][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-21 18:22:53.424][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-21 18:22:53.425][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-21 18:22:53.425][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-21 18:22:53.425][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-21 18:22:53.426][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-21 18:22:53.426][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-21 18:22:53.427][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-21 18:22:53.427][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-21 18:22:53.427][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-21 18:22:53.428][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-21 18:22:53.428][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-21 18:22:53.429][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-21 18:22:53.429][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-21 18:22:53.430][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-21 18:22:53.430][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-21 18:22:53.430][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-21 18:22:53.431][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-21 18:22:53.431][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-21 18:22:53.432][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-21 18:22:53.432][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-21 18:22:53.432][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-21 18:22:53.433][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-21 18:22:53.433][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-21 18:22:53.433][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-21 18:22:53.434][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-21 18:22:53.434][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-21 18:22:53.434][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-21 18:22:53.436][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-21 18:22:53.437][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-21 18:22:53.438][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 18:22:53.439][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.439][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:53.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:53.496][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-21 18:22:53.500][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:53.501][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.501][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.502][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.502][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:53.502][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.503][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-21 18:22:53.503][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.503][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.503][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-21 18:22:53.504][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:53.504][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.504][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-21 18:22:53.504][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-21 18:22:53.505][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-21 18:22:53.506][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-21 18:22:53.506][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:53.506][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:53.507][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:53.507][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:53.507][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:53.507][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:53.508][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 18:22:53.508][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-21 18:22:53.508][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:53.508][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:53.508][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:53.509][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:53.511][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-21 18:22:53.511][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 18:22:53.512][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 18:22:53.512][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 18:22:53.513][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 18:22:53.523][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:53.523][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-21 18:22:53.525][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:53.526][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 18:22:53.528][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:53.528][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:53.529][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-21 18:22:53.529][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-21 18:22:53.529][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 18:22:53.529][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-21 18:22:53.530][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:53.530][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:53.530][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-21 18:22:53.530][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-21 18:22:53.531][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:53.539][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 18:22:53.539][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:53.540][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:53.540][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 18:22:53.540][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:53.541][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-21 18:22:53.544][biodb::testThat]
biodb.INFO [2025-04-21 18:22:53.544][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-21 18:22:53.545][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:53.545][biodb::testThat]
biodb.TRACE[2025-04-21 18:22:53.547][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-04-21 18:22:53.548][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 18:22:53.549][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 18:22:53.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:53.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:53.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:53.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:53.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:53.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:53.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 18:22:53.560][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.579][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.579][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.588][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.589][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.589][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.590][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.591][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.591][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.596][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.596][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.598][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.599][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.603][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.604][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.606][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.606][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.608][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.608][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.610][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:53.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:53.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:53.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:53.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:53.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:53.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:53.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.619][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.621][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:53.621][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:53.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.622][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:53.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:53.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.623][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:53.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:53.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:53.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:53.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.625][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 18:22:53.625][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 18:22:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.644][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.645][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.647][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.648][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:53.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:53.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.681][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:53.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.682][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:53.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:53.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:53.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:53.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:53.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:53.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:53.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:53.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:53.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.693][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.708][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.709][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.710][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:53.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:53.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:53.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:53.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:53.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:53.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 18:22:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 18:22:53.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.731][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.734][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:53.763][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-21 18:22:53.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 18:22:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 18:22:53.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.765][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 18:22:53.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 18:22:53.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-21 18:22:53.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-21 18:22:53.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.767][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-21 18:22:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-21 18:22:53.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.780][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.789][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.791][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:53.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.800][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.801][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:53.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.805][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.807][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.811][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.813][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.813][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:53.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.822][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.822][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:53.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:53.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.869][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.871][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.871][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:53.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.882][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:53.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.887][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:53.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:53.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.888][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:53.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:53.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.889][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:53.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:53.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.891][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:53.891][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:53.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.892][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:53.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:53.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:53.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:53.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:53.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:53.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:53.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.899][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:53.899][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:53.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:53.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:53.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.903][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.905][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.906][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.907][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.907][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:53.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:53.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.922][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.926][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:53.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.954][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.954][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.963][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.963][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:53.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:53.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:53.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:53.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:53.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.972][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:53.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:53.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:53.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:53.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:53.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:53.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:53.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:53.980][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:53.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:53.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.997][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.998][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:53.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:53.999][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.000][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.000][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.004][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.007][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.007][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.009][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.009][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.014][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.014][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.016][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.017][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.019][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.019][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.021][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:54.022][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:54.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.024][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.024][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.026][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:54.026][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:54.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.028][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:54.029][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:54.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.031][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.034][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.056][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.060][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.066][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.066][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:54.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:54.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.071][ef$get] fields variable is a list.
biodb.INFO [2025-04-21 18:22:54.075][biodb::testThat]
biodb.INFO [2025-04-21 18:22:54.075][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-21 18:22:54.076][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:54.076][biodb::testThat]
biodb.DEBUG[2025-04-21 18:22:54.081][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-04-21 18:22:54.084][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 18:22:54.087][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.087][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 18:22:54.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-04-21 18:22:54.088][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-21 18:22:54.089][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-04-21 18:22:54.090][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 18:22:54.105][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 18:22:54.105][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 18:22:54.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:54.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:54.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:54.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:54.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:54.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:54.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 18:22:54.113][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.113][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.116][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.116][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.117][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.119][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.120][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.122][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.122][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.125][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.135][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.135][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.138][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.138][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.161][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.162][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.164][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.164][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.166][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:54.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:54.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:54.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:54.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:54.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:54.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.175][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.178][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.178][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.179][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:54.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:54.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:54.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:54.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.182][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 18:22:54.182][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:54.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 18:22:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.188][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.189][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:54.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.193][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.195][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:54.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:54.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:54.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:54.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:54.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:54.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:54.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:54.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:54.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:54.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.212][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.213][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:54.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:54.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:54.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:54.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:54.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:54.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:54.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:54.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.234][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.235][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.236][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:54.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:54.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:54.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.251][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.252][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:54.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:54.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:54.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:54.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:54.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:54.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.256][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 18:22:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.260][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 18:22:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.268][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:54.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:54.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.269][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:54.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:54.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.271][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:54.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:54.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:54.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.282][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-21 18:22:54.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-21 18:22:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-21 18:22:54.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-21 18:22:54.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-21 18:22:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-21 18:22:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-21 18:22:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-21 18:22:54.288][biodb::testThat]
biodb.INFO [2025-04-21 18:22:54.289][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-21 18:22:54.289][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:54.289][biodb::testThat]
biodb.TRACE[2025-04-21 18:22:54.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.291][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.292][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-04-21 18:22:54.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.308][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-04-21 18:22:54.308][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-04-21 18:22:54.309][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-21 18:22:54.309][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-21 18:22:54.309][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.310][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.310][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 18:22:54.311][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.311][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 18:22:54.311][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 18:22:54.312][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 18:22:54.312][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 18:22:54.312][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 18:22:54.312][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 18:22:54.313][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 18:22:54.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.319][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 18:22:54.320][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 18:22:54.320][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-04-21 18:22:54.325][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.325][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.328][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.329][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-04-21 18:22:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.341][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.345][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-04-21 18:22:54.363][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-21 18:22:54.363][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-04-21 18:22:54.364][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-04-21 18:22:54.371][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.371][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.372][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 18:22:54.372][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.373][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 18:22:54.389][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 18:22:54.390][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 18:22:54.390][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 18:22:54.390][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 18:22:54.390][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 18:22:54.391][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 18:22:54.391][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:54.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.396][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 18:22:54.396][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 18:22:54.396][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-04-21 18:22:54.401][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.401][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.403][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.404][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-04-21 18:22:54.408][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.409][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.410][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.412][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-04-21 18:22:54.413][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-04-21 18:22:54.413][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-04-21 18:22:54.413][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-04-21 18:22:54.414][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.414][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.414][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 18:22:54.415][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.415][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 18:22:54.415][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 18:22:54.416][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 18:22:54.416][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 18:22:54.416][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 18:22:54.416][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 18:22:54.417][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 18:22:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.418][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.420][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:54.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.422][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 18:22:54.422][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 18:22:54.422][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-04-21 18:22:54.427][biodb::testThat]
biodb.INFO [2025-04-21 18:22:54.428][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-21 18:22:54.428][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:54.428][biodb::testThat]
biodb.TRACE[2025-04-21 18:22:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.441][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-04-21 18:22:54.442][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-21 18:22:54.442][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-21 18:22:54.443][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.443][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.443][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 18:22:54.444][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:54.444][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 18:22:54.444][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 18:22:54.445][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 18:22:54.445][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 18:22:54.445][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 18:22:54.445][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 18:22:54.446][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 18:22:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:54.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:54.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:54.454][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 18:22:54.455][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-04-21 18:22:54.461][biodb::testThat]
biodb.INFO [2025-04-21 18:22:54.461][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-21 18:22:54.461][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:54.461][biodb::testThat]
biodb.TRACE[2025-04-21 18:22:54.468][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 18:22:54.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 18:22:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 18:22:54.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 18:22:54.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-21 18:22:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-21 18:22:54.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.472][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-21 18:22:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-21 18:22:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 18:22:54.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 18:22:54.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 18:22:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 18:22:54.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-21 18:22:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-21 18:22:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:54.491][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-21 18:22:54.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-21 18:22:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-21 18:22:54.495][biodb::testThat]
biodb.INFO [2025-04-21 18:22:54.495][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-21 18:22:54.496][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:54.496][biodb::testThat]
biodb.INFO [2025-04-21 18:22:54.499][biodb::testThat]
biodb.INFO [2025-04-21 18:22:54.499][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-21 18:22:54.500][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:54.500][biodb::testThat]
biodb.INFO [2025-04-21 18:22:54.502][biodb::testThat]
biodb.INFO [2025-04-21 18:22:54.503][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-21 18:22:54.503][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:54.503][biodb::testThat]
biodb.DEBUG[2025-04-21 18:22:54.504][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-04-21 18:22:56.417][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-04-21 18:22:56.468][biodb::testThat]
biodb.INFO [2025-04-21 18:22:56.469][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-21 18:22:56.469][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:56.469][biodb::testThat]
biodb.DEBUG[2025-04-21 18:22:56.634][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-04-21 18:22:56.663][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:56.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:56.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.665][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:56.665][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:56.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.666][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:56.667][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:56.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.667][ef$get] fields variable is a list.
biodb.INFO [2025-04-21 18:22:56.668][biodb::testThat]
biodb.INFO [2025-04-21 18:22:56.668][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-04-21 18:22:56.669][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:56.669][biodb::testThat]
biodb.DEBUG[2025-04-21 18:22:56.670][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-04-21 18:22:56.691][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 18:22:56.692][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:56.692][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 18:22:56.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-04-21 18:22:56.699][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-21 18:22:56.699][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-21 18:22:56.699][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 18:22:56.700][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:56.700][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 18:22:56.701][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 18:22:56.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:56.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 18:22:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:56.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:56.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:56.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:56.731][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-04-21 18:22:56.731][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-04-21 18:22:56.738][biodb::testThat]
biodb.INFO [2025-04-21 18:22:56.738][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-04-21 18:22:56.738][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:56.739][biodb::testThat]
biodb.DEBUG[2025-04-21 18:22:56.742][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-04-21 18:22:56.742][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-04-21 18:22:56.742][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 18:22:56.743][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:56.743][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 18:22:56.744][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-04-21 18:22:56.744][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-21 18:22:56.745][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-21 18:22:56.745][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 18:22:56.745][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:56.746][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 18:22:56.746][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 18:22:56.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:56.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 18:22:56.751][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:56.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:56.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:56.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:56.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:56.761][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-04-21 18:22:56.762][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-04-21 18:22:56.762][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-04-21 18:22:56.770][biodb::testThat]
biodb.INFO [2025-04-21 18:22:56.771][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-04-21 18:22:56.771][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:56.772][biodb::testThat]
biodb.INFO [2025-04-21 18:22:56.782][biodb::testThat]
biodb.INFO [2025-04-21 18:22:56.782][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-04-21 18:22:56.783][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:56.783][biodb::testThat]
biodb.DEBUG[2025-04-21 18:22:56.784][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:56.784][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:56.785][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 18:22:56.785][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:56.786][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 18:22:56.786][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 18:22:56.787][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 18:22:56.787][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 18:22:56.787][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-04-21 18:22:56.791][biodb::testThat]
biodb.INFO [2025-04-21 18:22:56.791][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-04-21 18:22:56.791][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:56.792][biodb::testThat]
biodb.DEBUG[2025-04-21 18:22:56.792][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:56.793][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:56.793][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 18:22:56.794][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:56.794][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 18:22:56.795][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 18:22:56.795][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 18:22:56.795][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 18:22:56.796][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-04-21 18:22:56.799][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:56.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.800][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:56.801][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:56.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:56.802][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:56.802][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:56.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:56.802][ef$get] fields variable is a list.
biodb.INFO [2025-04-21 18:22:56.803][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-21 18:22:56.803][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-21 18:22:56.806][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-21 18:22:56.806][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-21 18:22:56.807][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.807][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.808][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-21 18:22:56.810][biodb::testContext]
biodb.INFO [2025-04-21 18:22:56.810][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 18:22:56.810][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-04-21 18:22:56.811][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 18:22:56.811][biodb::testContext]
biodb.INFO [2025-04-21 18:22:56.813][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-21 18:22:56.817][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-21 18:22:56.819][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 18:22:56.819][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-21 18:22:56.820][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-21 18:22:56.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.821][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-21 18:22:56.821][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-21 18:22:56.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.822][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-21 18:22:56.822][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-21 18:22:56.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.824][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-21 18:22:56.824][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-21 18:22:56.824][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-21 18:22:56.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.826][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-21 18:22:56.826][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-21 18:22:56.826][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-21 18:22:56.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.827][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-21 18:22:56.828][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-21 18:22:56.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.829][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-21 18:22:56.829][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-21 18:22:56.830][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-21 18:22:56.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.831][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-21 18:22:56.831][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-21 18:22:56.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.832][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-21 18:22:56.832][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-21 18:22:56.833][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-21 18:22:56.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.834][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-21 18:22:56.834][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-21 18:22:56.834][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-21 18:22:56.835][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-21 18:22:56.835][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-21 18:22:56.835][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-21 18:22:56.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.836][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-21 18:22:56.837][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-21 18:22:56.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.838][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-21 18:22:56.838][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-21 18:22:56.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.839][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-21 18:22:56.840][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-21 18:22:56.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.841][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-21 18:22:56.841][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-21 18:22:56.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.842][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-21 18:22:56.843][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-21 18:22:56.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.844][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-21 18:22:56.844][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-21 18:22:56.851][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-21 18:22:56.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.853][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-21 18:22:56.853][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-21 18:22:56.853][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-21 18:22:56.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.854][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-21 18:22:56.855][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.855][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-21 18:22:56.856][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.856][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:56.856][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.856][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.857][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.857][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.857][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 18:22:56.857][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:56.861][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.861][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-21 18:22:56.862][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:56.862][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.862][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.863][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 18:22:56.863][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 18:22:56.863][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 18:22:56.863][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 18:22:56.863][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 18:22:56.863][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:56.863][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:56.863][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:56.864][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:56.864][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:56.864][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:56.864][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.865][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.865][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:56.865][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:56.865][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.866][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.866][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-21 18:22:56.867][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.867][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 18:22:56.867][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.868][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:56.868][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.868][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.868][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.869][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.869][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 18:22:56.869][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:56.870][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.870][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-21 18:22:56.870][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:56.871][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.871][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.871][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 18:22:56.871][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 18:22:56.871][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 18:22:56.871][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 18:22:56.871][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 18:22:56.871][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:56.872][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:56.872][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:56.872][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:56.872][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:56.873][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:56.873][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.873][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.873][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:56.874][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:56.874][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.874][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.875][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-21 18:22:56.875][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.876][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-21 18:22:56.876][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.876][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:56.876][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.877][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.877][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.877][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.877][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 18:22:56.878][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:56.878][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.878][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-21 18:22:56.879][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:56.879][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.879][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.879][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.880][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:56.880][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:56.880][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:56.880][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:56.881][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:56.881][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:56.881][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.882][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.882][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:56.882][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:56.882][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.883][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.883][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-21 18:22:56.883][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.884][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 18:22:56.884][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.884][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:56.885][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.885][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.885][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.885][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.886][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 18:22:56.886][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:56.886][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.887][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-21 18:22:56.887][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:56.887][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.887][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.888][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.888][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:56.888][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:56.889][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:56.889][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:56.889][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:56.889][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:56.890][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.890][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.890][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:56.890][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:56.891][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.894][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.895][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 18:22:56.895][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.916][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-21 18:22:56.917][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-21 18:22:56.917][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-21 18:22:56.918][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-21 18:22:56.918][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-21 18:22:56.918][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 18:22:56.919][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-21 18:22:56.919][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-21 18:22:56.920][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-21 18:22:56.920][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 18:22:56.920][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 18:22:56.921][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-21 18:22:56.921][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-21 18:22:56.922][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-21 18:22:56.922][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-21 18:22:56.922][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 18:22:56.923][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-21 18:22:56.926][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-21 18:22:56.927][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-21 18:22:56.927][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-21 18:22:56.928][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-21 18:22:56.928][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-21 18:22:56.928][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-21 18:22:56.929][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-21 18:22:56.929][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-21 18:22:56.930][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-21 18:22:56.930][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-21 18:22:56.930][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-21 18:22:56.931][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-21 18:22:56.931][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-21 18:22:56.932][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-21 18:22:56.932][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-21 18:22:56.932][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-21 18:22:56.933][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-21 18:22:56.933][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-21 18:22:56.934][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-21 18:22:56.934][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-21 18:22:56.934][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-21 18:22:56.935][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-21 18:22:56.935][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-21 18:22:56.936][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-21 18:22:56.936][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-21 18:22:56.936][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-21 18:22:56.937][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-21 18:22:56.937][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-21 18:22:56.937][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-21 18:22:56.938][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-21 18:22:56.938][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-21 18:22:56.939][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-21 18:22:56.939][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-21 18:22:56.939][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-21 18:22:56.940][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-21 18:22:56.940][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-21 18:22:56.940][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-21 18:22:56.941][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-21 18:22:56.941][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-21 18:22:56.942][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-21 18:22:56.942][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-21 18:22:56.942][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-21 18:22:56.943][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-21 18:22:56.943][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-21 18:22:56.943][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-21 18:22:56.944][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-21 18:22:56.944][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-21 18:22:56.945][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-21 18:22:56.945][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-21 18:22:56.945][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-21 18:22:56.946][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-21 18:22:56.946][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-21 18:22:56.946][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-21 18:22:56.947][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-21 18:22:56.947][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-21 18:22:56.948][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-21 18:22:56.948][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-21 18:22:56.948][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-21 18:22:56.949][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-21 18:22:56.949][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-21 18:22:56.950][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-21 18:22:56.950][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-21 18:22:56.950][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-21 18:22:56.951][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-21 18:22:56.951][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-21 18:22:56.951][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-21 18:22:56.952][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-21 18:22:56.952][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-21 18:22:56.953][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 18:22:56.953][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.953][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:56.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:56.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:56.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:56.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:56.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:56.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:56.989][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-21 18:22:56.990][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:56.990][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.991][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.991][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.991][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:56.991][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.992][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-21 18:22:56.992][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.992][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.993][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-21 18:22:56.993][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:56.993][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.993][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-21 18:22:56.994][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:56.995][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 18:22:56.995][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-21 18:22:56.995][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-21 18:22:56.995][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-21 18:22:56.995][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:56.995][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:56.996][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:56.996][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:56.996][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:56.996][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:56.997][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 18:22:56.997][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-21 18:22:56.997][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:56.997][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:56.997][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:56.998][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:56.998][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-21 18:22:56.999][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 18:22:56.999][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 18:22:56.999][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 18:22:57.000][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 18:22:57.001][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:57.001][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-21 18:22:57.002][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:57.002][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 18:22:57.002][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:57.003][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:57.003][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-21 18:22:57.003][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-21 18:22:57.004][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 18:22:57.004][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-21 18:22:57.004][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:57.004][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:57.004][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-21 18:22:57.005][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-21 18:22:57.005][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:57.005][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 18:22:57.006][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:57.006][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:57.006][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 18:22:57.007][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:57.007][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-21 18:22:57.007][biodb::testThat]
biodb.INFO [2025-04-21 18:22:57.008][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-04-21 18:22:57.008][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:57.008][biodb::testThat]
biodb.DEBUG[2025-04-21 18:22:57.009][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.010][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.010][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 18:22:57.011][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.011][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 18:22:57.011][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 18:22:57.012][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 18:22:57.013][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 18:22:57.013][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 18:22:57.014][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-04-21 18:22:57.017][biodb::testThat]
biodb.INFO [2025-04-21 18:22:57.017][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-04-21 18:22:57.018][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:57.018][biodb::testThat]
biodb.DEBUG[2025-04-21 18:22:57.019][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-04-21 18:22:57.019][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 18:22:57.019][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.020][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 18:22:57.021][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-04-21 18:22:57.021][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-21 18:22:57.023][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-21 18:22:57.023][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 18:22:57.024][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 18:22:57.024][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 18:22:57.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:57.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 18:22:57.035][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.037][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.038][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.040][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.041][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.041][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.044][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.046][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.046][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.050][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.051][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.053][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.053][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.054][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.057][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.058][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.060][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.060][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.062][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.064][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.070][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.075][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.077][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.077][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.078][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.080][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.082][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 18:22:57.082][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.083][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 18:22:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.087][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.088][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.090][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.091][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.092][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.115][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.116][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.128][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.129][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.143][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.150][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 18:22:57.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 18:22:57.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.167][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.169][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:57.176][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-04-21 18:22:57.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-21 18:22:57.183][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-21 18:22:57.183][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-21 18:22:57.184][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-21 18:22:57.184][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-21 18:22:57.184][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.185][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.185][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-21 18:22:57.187][biodb::testContext]
biodb.INFO [2025-04-21 18:22:57.188][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 18:22:57.188][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-04-21 18:22:57.188][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 18:22:57.188][biodb::testContext]
biodb.INFO [2025-04-21 18:22:57.190][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-21 18:22:57.191][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-21 18:22:57.192][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 18:22:57.193][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-21 18:22:57.193][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-21 18:22:57.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.194][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-21 18:22:57.194][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-21 18:22:57.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.195][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-21 18:22:57.195][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-21 18:22:57.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.196][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-21 18:22:57.197][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-21 18:22:57.197][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-21 18:22:57.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.198][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-21 18:22:57.198][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-21 18:22:57.198][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-21 18:22:57.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.202][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-21 18:22:57.202][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-21 18:22:57.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.203][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-21 18:22:57.204][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-21 18:22:57.204][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-21 18:22:57.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.205][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-21 18:22:57.205][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-21 18:22:57.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.206][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-21 18:22:57.206][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-21 18:22:57.207][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-21 18:22:57.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.207][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-21 18:22:57.208][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-21 18:22:57.208][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-21 18:22:57.208][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-21 18:22:57.209][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-21 18:22:57.209][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-21 18:22:57.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.210][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-21 18:22:57.210][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-21 18:22:57.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.211][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-21 18:22:57.211][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-21 18:22:57.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.212][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-21 18:22:57.212][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-21 18:22:57.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.213][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-21 18:22:57.214][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-21 18:22:57.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.215][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-21 18:22:57.215][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-21 18:22:57.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.216][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-21 18:22:57.216][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-21 18:22:57.223][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-21 18:22:57.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.225][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-21 18:22:57.225][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-21 18:22:57.226][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-21 18:22:57.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.227][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-21 18:22:57.227][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.228][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-21 18:22:57.228][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.228][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:57.229][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.229][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.229][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.230][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.230][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 18:22:57.230][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:57.231][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.231][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-21 18:22:57.231][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:57.232][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.232][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.232][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 18:22:57.232][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 18:22:57.232][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 18:22:57.232][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 18:22:57.232][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 18:22:57.233][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:57.233][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:57.233][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:57.234][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:57.234][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:57.234][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:57.234][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.235][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.235][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:57.235][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:57.235][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.236][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.236][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-21 18:22:57.237][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.237][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 18:22:57.237][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.237][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:57.241][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.241][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.242][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.242][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.242][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 18:22:57.243][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:57.243][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.243][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-21 18:22:57.244][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:57.244][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.244][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.244][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 18:22:57.244][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 18:22:57.244][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 18:22:57.244][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 18:22:57.244][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 18:22:57.245][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:57.245][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:57.245][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:57.245][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:57.246][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:57.246][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:57.246][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.246][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.247][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:57.247][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:57.247][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.248][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.248][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-21 18:22:57.248][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.249][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-21 18:22:57.249][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.249][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:57.250][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.250][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.250][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.251][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.251][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 18:22:57.251][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:57.251][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.252][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-21 18:22:57.252][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:57.252][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.253][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.253][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.253][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:57.253][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:57.254][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:57.254][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:57.254][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:57.254][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:57.255][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.255][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.255][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:57.255][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:57.256][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.256][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.256][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-21 18:22:57.257][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.257][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 18:22:57.257][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.258][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:57.258][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.258][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.258][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.259][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.259][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 18:22:57.259][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:57.260][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.260][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-21 18:22:57.260][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:57.260][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.261][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.261][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.261][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 18:22:57.261][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:57.262][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:57.262][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:57.262][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:57.262][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:57.263][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.263][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.263][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:57.263][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:57.264][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.264][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.264][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 18:22:57.265][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.288][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-21 18:22:57.289][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-21 18:22:57.289][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-21 18:22:57.289][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-21 18:22:57.290][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-21 18:22:57.290][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 18:22:57.290][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-21 18:22:57.291][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-21 18:22:57.291][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-21 18:22:57.292][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 18:22:57.292][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 18:22:57.292][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-21 18:22:57.293][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-21 18:22:57.293][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-21 18:22:57.293][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-21 18:22:57.294][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 18:22:57.294][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-21 18:22:57.295][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-21 18:22:57.295][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-21 18:22:57.295][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-21 18:22:57.296][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-21 18:22:57.296][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-21 18:22:57.297][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-21 18:22:57.297][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-21 18:22:57.297][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-21 18:22:57.298][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-21 18:22:57.298][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-21 18:22:57.299][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-21 18:22:57.302][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-21 18:22:57.302][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-21 18:22:57.303][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-21 18:22:57.303][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-21 18:22:57.304][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-21 18:22:57.304][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-21 18:22:57.304][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-21 18:22:57.305][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-21 18:22:57.305][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-21 18:22:57.306][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-21 18:22:57.306][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-21 18:22:57.306][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-21 18:22:57.307][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-21 18:22:57.307][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-21 18:22:57.307][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-21 18:22:57.308][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-21 18:22:57.308][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-21 18:22:57.309][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-21 18:22:57.309][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-21 18:22:57.309][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-21 18:22:57.310][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-21 18:22:57.310][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-21 18:22:57.311][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-21 18:22:57.311][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-21 18:22:57.311][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-21 18:22:57.312][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-21 18:22:57.312][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-21 18:22:57.312][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-21 18:22:57.313][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-21 18:22:57.313][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-21 18:22:57.314][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-21 18:22:57.314][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-21 18:22:57.314][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-21 18:22:57.315][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-21 18:22:57.315][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-21 18:22:57.315][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-21 18:22:57.316][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-21 18:22:57.316][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-21 18:22:57.317][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-21 18:22:57.317][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-21 18:22:57.318][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-21 18:22:57.318][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-21 18:22:57.318][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-21 18:22:57.319][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-21 18:22:57.319][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-21 18:22:57.319][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-21 18:22:57.320][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-21 18:22:57.320][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-21 18:22:57.321][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-21 18:22:57.321][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-21 18:22:57.322][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-21 18:22:57.323][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-21 18:22:57.323][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-21 18:22:57.323][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-21 18:22:57.324][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-21 18:22:57.324][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-21 18:22:57.325][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-21 18:22:57.325][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 18:22:57.326][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.326][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 18:22:57.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.363][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-21 18:22:57.363][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:57.364][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.364][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.364][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.367][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 18:22:57.368][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.368][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-21 18:22:57.369][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.369][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.369][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-21 18:22:57.370][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 18:22:57.370][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.370][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-21 18:22:57.370][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-21 18:22:57.371][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-21 18:22:57.372][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:57.372][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:57.372][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 18:22:57.372][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 18:22:57.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 18:22:57.373][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 18:22:57.373][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 18:22:57.373][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-21 18:22:57.373][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:57.374][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:57.374][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-21 18:22:57.374][self$setPropertyValue]
biodb.DEBUG[2025-04-21 18:22:57.375][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-21 18:22:57.375][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 18:22:57.375][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 18:22:57.376][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 18:22:57.376][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 18:22:57.377][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:57.378][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-21 18:22:57.378][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:57.378][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 18:22:57.379][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:57.379][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:57.379][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-21 18:22:57.380][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-21 18:22:57.380][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 18:22:57.380][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-21 18:22:57.380][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 18:22:57.380][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 18:22:57.381][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-21 18:22:57.381][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-21 18:22:57.381][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 18:22:57.382][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 18:22:57.382][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:57.382][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:57.383][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 18:22:57.383][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 18:22:57.383][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-21 18:22:57.384][biodb::testThat]
biodb.INFO [2025-04-21 18:22:57.384][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-04-21 18:22:57.384][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 18:22:57.384][biodb::testThat]
biodb.DEBUG[2025-04-21 18:22:57.385][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-21 18:22:57.385][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-04-21 18:22:57.386][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-04-21 18:22:57.387][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.387][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.387][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 18:22:57.388][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.388][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 18:22:57.388][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 18:22:57.389][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 18:22:57.389][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 18:22:57.389][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 18:22:57.390][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 18:22:57.390][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-04-21 18:22:57.390][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-04-21 18:22:57.391][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 18:22:57.391][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.392][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 18:22:57.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-04-21 18:22:57.393][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-21 18:22:57.393][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-04-21 18:22:57.393][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 18:22:57.394][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 18:22:57.394][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 18:22:57.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:57.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 18:22:57.402][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.405][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.405][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.407][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.407][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.408][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.409][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.410][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.414][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.414][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.416][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.416][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.417][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.420][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.420][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.422][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.423][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.425][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.429][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.434][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.435][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.437][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.439][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.439][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.440][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.441][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.441][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.443][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 18:22:57.443][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.444][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 18:22:57.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.449][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.451][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.452][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.453][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.454][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.479][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.481][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.492][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.493][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.508][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.510][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.511][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.515][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 18:22:57.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 18:22:57.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.526][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.533][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:57.541][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-21 18:22:57.541][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.542][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.543][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.544][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:57.546][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 18:22:57.546][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 18:22:57.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:57.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.551][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-04-21 18:22:57.551][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 18:22:57.551][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.552][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 18:22:57.552][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-04-21 18:22:57.553][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-21 18:22:57.553][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-21 18:22:57.554][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 18:22:57.554][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 18:22:57.554][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 18:22:57.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:57.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 18:22:57.559][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.560][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.562][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.562][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.563][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.567][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.568][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.569][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.571][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.571][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.572][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.575][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.576][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.578][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.580][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.582][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.583][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.585][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.585][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.587][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.592][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.597][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.598][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.603][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.604][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.605][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.606][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.607][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.609][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 18:22:57.609][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.610][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 18:22:57.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.614][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.615][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.616][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 18:22:57.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.617][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.618][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.620][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 18:22:57.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 18:22:57.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 18:22:57.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 18:22:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 18:22:57.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 18:22:57.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.641][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.642][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.643][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 18:22:57.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 18:22:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 18:22:57.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 18:22:57.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.657][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 18:22:57.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 18:22:57.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 18:22:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.674][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.676][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 18:22:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 18:22:57.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 18:22:57.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.681][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 18:22:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 18:22:57.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 18:22:57.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 18:22:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 18:22:57.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.692][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.693][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.695][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 18:22:57.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 18:22:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 18:22:57.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:57.707][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-04-21 18:22:57.707][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.708][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.709][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:57.711][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 18:22:57.711][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-04-21 18:22:57.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:57.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.717][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-21 18:22:57.718][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-04-21 18:22:57.718][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-04-21 18:22:57.718][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.719][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.719][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 18:22:57.720][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.720][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 18:22:57.720][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 18:22:57.721][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 18:22:57.721][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 18:22:57.721][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 18:22:57.722][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 18:22:57.722][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 18:22:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.725][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.726][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.727][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.729][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:57.730][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 18:22:57.730][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 18:22:57.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:57.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 18:22:57.735][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.739][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.742][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.743][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.744][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.745][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:57.747][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-04-21 18:22:57.748][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 18:22:57.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:57.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 18:22:57.753][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-21 18:22:57.754][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-04-21 18:22:57.754][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-04-21 18:22:57.755][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.755][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.755][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 18:22:57.756][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 18:22:57.756][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 18:22:57.756][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 18:22:57.757][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 18:22:57.757][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 18:22:57.757][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 18:22:57.758][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 18:22:57.758][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 18:22:57.759][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.760][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.762][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.763][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.764][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.765][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:57.766][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-04-21 18:22:57.767][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-04-21 18:22:57.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:57.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 18:22:57.771][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.776][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.778][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.780][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 18:22:57.782][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 18:22:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 18:22:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 18:22:57.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 18:22:57.783][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 18:22:57.784][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 18:22:57.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 18:22:57.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-21 18:22:57.790][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-21 18:22:57.791][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-21 18:22:57.791][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-21 18:22:57.791][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-21 18:22:57.792][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 18:22:57.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 18:22:57.792][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 18:22:57.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 18:22:57.793][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 18:22:57.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  2.883   0.217   5.432

Example timings