Pierrick Roger
| Snapshot Date: 2025-08-07 13:40 -0400 (Thu, 07 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_21 |
| git_last_commit: b8d718f |
| git_last_commit_date: 2025-04-15 12:39:10 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-08-11 11:41 -0400 (Mon, 11 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4823 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4565 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4603 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4544 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 206/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.14.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.14.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbChebi_1.14.0.tar.gz |
| StartedAt: 2025-08-07 23:34:02 -0400 (Thu, 07 Aug 2025) |
| EndedAt: 2025-08-07 23:42:47 -0400 (Thu, 07 Aug 2025) |
| EllapsedTime: 525.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbChebi_1.14.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/biodbChebi.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.14.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 3.8 2.44 281.22
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'biodbChebi' ... ** this is package 'biodbChebi' version '1.14.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.5.1 (2025-06-13 ucrt) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-08-07 23:41:56.517][biodb::testContext]
biodb.INFO [2025-08-07 23:41:56.520][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-07 23:41:56.522][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-08-07 23:41:56.523][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-07 23:41:56.524][biodb::testContext]
biodb.INFO [2025-08-07 23:41:56.532][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-07 23:41:56.535][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-07 23:41:56.557][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:41:56.558][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-07 23:41:56.559][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-07 23:41:56.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.566][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-07 23:41:56.585][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-07 23:41:56.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.590][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-07 23:41:56.591][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-07 23:41:56.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.596][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-07 23:41:56.597][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-07 23:41:56.598][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-07 23:41:56.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.603][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-07 23:41:56.604][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-07 23:41:56.605][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-07 23:41:56.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.610][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-07 23:41:56.611][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-07 23:41:56.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.616][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-07 23:41:56.617][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-07 23:41:56.618][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-07 23:41:56.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.623][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-07 23:41:56.624][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-07 23:41:56.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.628][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-07 23:41:56.630][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-07 23:41:56.631][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-07 23:41:56.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.636][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-07 23:41:56.637][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-07 23:41:56.638][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-07 23:41:56.639][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-07 23:41:56.641][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-07 23:41:56.642][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-07 23:41:56.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.647][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-07 23:41:56.648][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-07 23:41:56.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.653][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-07 23:41:56.654][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-07 23:41:56.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.658][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-07 23:41:56.660][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-07 23:41:56.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.664][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-07 23:41:56.666][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-07 23:41:56.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.670][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-07 23:41:56.671][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-07 23:41:56.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.676][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-07 23:41:56.677][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-07 23:41:56.680][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-07 23:41:56.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.684][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-07 23:41:56.685][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-07 23:41:56.687][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-07 23:41:56.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.693][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-07 23:41:56.725][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.740][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-07 23:41:56.748][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.750][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:41:56.751][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.752][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.753][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.755][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.756][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-07 23:41:56.757][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:41:56.758][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.760][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-07 23:41:56.761][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:41:56.762][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.763][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.765][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:41:56.765][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:41:56.765][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:41:56.765][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-07 23:41:56.765][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-07 23:41:56.766][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:41:56.767][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:41:56.768][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:41:56.770][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:41:56.771][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:41:56.772][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:41:56.773][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.775][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.776][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:41:56.777][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:41:56.778][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.779][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.781][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-07 23:41:56.783][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.784][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-07 23:41:56.785][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.787][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:41:56.788][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.789][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.790][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.792][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.793][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-07 23:41:56.794][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:41:56.795][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.797][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-07 23:41:56.798][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:41:56.799][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.800][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.802][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:41:56.802][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:41:56.802][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:41:56.802][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-07 23:41:56.802][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-07 23:41:56.803][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:41:56.804][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:41:56.805][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:41:56.807][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:41:56.808][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:41:56.809][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:41:56.810][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.811][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.812][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:41:56.813][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:41:56.815][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.816][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.817][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-07 23:41:56.819][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.820][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-07 23:41:56.821][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.823][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:41:56.824][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.825][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.826][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.827][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.829][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-07 23:41:56.830][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:41:56.831][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.832][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-07 23:41:56.833][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:41:56.835][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.836][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.837][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.838][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:41:56.839][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:41:56.840][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:41:56.842][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:41:56.843][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:41:56.844][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:41:56.845][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.846][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.847][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:41:56.849][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:41:56.850][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.851][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.852][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-07 23:41:56.854][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.855][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-07 23:41:56.857][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.858][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:41:56.859][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.860][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.861][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.862][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.864][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-07 23:41:56.865][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:41:56.866][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.867][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-07 23:41:56.868][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:41:56.870][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.871][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:56.872][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.873][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:41:56.874][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:41:56.875][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:41:56.877][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:41:56.878][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:41:56.879][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:41:56.880][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:41:56.881][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.882][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:41:56.884][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:41:56.885][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:56.886][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:41:56.889][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:41:56.890][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:56.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:56.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:56.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:56.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:56.990][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-07 23:41:56.994][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-07 23:41:56.996][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-07 23:41:56.997][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-07 23:41:56.999][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-07 23:41:57.001][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-07 23:41:57.002][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-07 23:41:57.004][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-07 23:41:57.005][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-07 23:41:57.007][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-07 23:41:57.008][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-07 23:41:57.010][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-07 23:41:57.011][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-07 23:41:57.013][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-07 23:41:57.014][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-07 23:41:57.016][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-07 23:41:57.017][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-07 23:41:57.019][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-07 23:41:57.021][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-07 23:41:57.022][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-07 23:41:57.024][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-07 23:41:57.025][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-07 23:41:57.027][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-07 23:41:57.028][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-07 23:41:57.030][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-07 23:41:57.031][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-07 23:41:57.033][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-07 23:41:57.034][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-07 23:41:57.036][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-07 23:41:57.038][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-07 23:41:57.039][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-07 23:41:57.041][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-07 23:41:57.042][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-07 23:41:57.044][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-07 23:41:57.045][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-07 23:41:57.047][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-07 23:41:57.048][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-07 23:41:57.050][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-07 23:41:57.052][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-07 23:41:57.053][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-07 23:41:57.055][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-07 23:41:57.056][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-07 23:41:57.058][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-07 23:41:57.059][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-07 23:41:57.061][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-07 23:41:57.062][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-07 23:41:57.064][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-07 23:41:57.065][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-07 23:41:57.067][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-07 23:41:57.068][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-07 23:41:57.070][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-07 23:41:57.072][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-07 23:41:57.073][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-07 23:41:57.075][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-07 23:41:57.076][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-07 23:41:57.078][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-07 23:41:57.079][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-07 23:41:57.081][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-07 23:41:57.082][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-07 23:41:57.084][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-07 23:41:57.085][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-07 23:41:57.087][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-07 23:41:57.088][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-07 23:41:57.090][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-07 23:41:57.092][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-07 23:41:57.093][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-07 23:41:57.095][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-07 23:41:57.096][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-07 23:41:57.098][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-07 23:41:57.099][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-07 23:41:57.101][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-07 23:41:57.102][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-07 23:41:57.104][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-07 23:41:57.105][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-07 23:41:57.107][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-07 23:41:57.109][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-07 23:41:57.110][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-07 23:41:57.112][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-07 23:41:57.114][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-07 23:41:57.116][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-07 23:41:57.118][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-07 23:41:57.119][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-07 23:41:57.121][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-07 23:41:57.145][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-07 23:41:57.148][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-07 23:41:57.151][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:41:57.152][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.154][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:41:57.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:41:57.305][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-07 23:41:57.314][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-07 23:41:57.317][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:57.318][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-07 23:41:57.320][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:57.321][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:41:57.322][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:57.323][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:41:57.325][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:57.326][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-07 23:41:57.327][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-07 23:41:57.329][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:41:57.330][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:57.331][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-07 23:41:57.332][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-07 23:41:57.334][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-07 23:41:57.335][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-07 23:41:57.336][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:41:57.336][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:41:57.336][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:41:57.338][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-07 23:41:57.339][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:41:57.340][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:41:57.341][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:41:57.343][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:41:57.344][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:41:57.345][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:41:57.346][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-07 23:41:57.346][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-07 23:41:57.348][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:41:57.349][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:41:57.350][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-07 23:41:57.351][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-07 23:41:57.351][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-07 23:41:57.357][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-07 23:41:57.359][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-07 23:41:57.361][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-07 23:41:57.363][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-07 23:41:57.365][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-07 23:41:57.367][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-07 23:41:57.416][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-07 23:41:57.418][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-08-07 23:41:57.422][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-08-07 23:41:57.427][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-08-07 23:41:57.431][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-07 23:41:57.433][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-07 23:41:57.435][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-08-07 23:41:57.436][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-07 23:41:57.456][biodb::testThat]
biodb.INFO [2025-08-07 23:41:57.458][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-08-07 23:41:57.459][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:41:57.460][biodb::testThat]
biodb.TRACE[2025-08-07 23:41:57.538][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-08-07 23:41:57.541][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:41:57.544][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:41:57.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:41:57.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:57.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:57.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:57.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:57.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:57.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:41:57.612][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:57.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:57.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.633][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:41:57.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:41:57.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:41:57.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:41:57.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.665][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:41:57.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:41:57.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:41:57.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:41:57.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:57.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:57.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:57.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:57.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:57.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.695][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:57.696][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:57.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.700][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:57.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.715][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:41:57.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:57.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.720][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:41:57.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:57.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.725][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:57.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:57.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:57.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.735][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:57.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:57.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.746][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:41:57.747][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:41:57.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:41:57.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:41:57.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:41:57.757][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:41:57.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:41:57.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:41:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:57.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:57.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:57.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:57.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:57.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:57.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:57.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:57.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:57.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:57.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:57.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:57.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:57.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:41:57.840][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-08-07 23:41:57.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:57.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:57.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:57.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:57.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:57.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:57.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:57.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:57.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:57.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:57.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:57.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-07 23:41:57.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-07 23:41:57.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-07 23:41:57.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-07 23:41:57.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-07 23:41:57.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-07 23:41:57.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.922][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-07 23:41:57.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-07 23:41:57.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:57.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:57.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:57.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:57.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:57.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.117][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.118][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:58.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:58.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:58.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:58.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:58.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:58.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.215][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:58.216][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:58.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:58.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:58.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:41:58.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:41:58.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:41:58.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:41:58.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:41:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:41:58.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.263][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:41:58.265][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:41:58.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.267][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:41:58.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:41:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.306][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.307][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:41:58.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:41:58.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:41:58.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:41:58.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.401][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:41:58.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:41:58.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.405][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:41:58.407][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:41:58.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.410][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:41:58.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:41:58.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.447][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.452][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.453][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.484][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.489][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.494][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.499][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.500][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:41:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:41:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:41:58.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:41:58.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:41:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:41:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.546][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:41:58.547][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:41:58.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:41:58.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:41:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:58.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:58.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:58.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:58.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:58.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:58.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:58.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:58.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.656][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:58.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.683][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:41:58.685][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:41:58.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.695][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:41:58.696][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:41:58.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.709][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:58.711][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:58.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.733][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:58.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.751][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.753][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:58.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.809][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:58.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:58.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.839][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.840][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:41:58.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.864][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:58.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:58.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.868][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:58.881][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:41:58.882][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:41:58.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:58.884][ef$get] fields variable is a list.
biodb.INFO [2025-08-07 23:41:58.898][biodb::testThat]
biodb.INFO [2025-08-07 23:41:58.899][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-08-07 23:41:58.900][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:41:58.902][biodb::testThat]
biodb.DEBUG[2025-08-07 23:41:58.915][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2025-08-07 23:41:58.921][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:41:58.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2025-08-07 23:41:58.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:41:58.932][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2025-08-07 23:41:58.933][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:41:58.954][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:41:58.955][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:41:58.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:41:58.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:41:58.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:41:58.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:41:58.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:41:58.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:41:58.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:41:58.997][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:58.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:59.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:59.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:59.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.021][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:41:59.022][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:41:59.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:41:59.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:41:59.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.037][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:41:59.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:41:59.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:41:59.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:41:59.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.047][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:59.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:59.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:59.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:59.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:59.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:59.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:41:59.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.078][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:41:59.079][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.083][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:41:59.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:59.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:59.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:59.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:59.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.098][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:59.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:59.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:59.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.109][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:41:59.110][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:41:59.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:41:59.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:41:59.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:41:59.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:41:59.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:41:59.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:41:59.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:59.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:59.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:41:59.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:41:59.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:59.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:59.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:59.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:59.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:59.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:59.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:59.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:59.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:59.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:41:59.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:41:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:41:59.179][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2025-08-07 23:41:59.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-07 23:41:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-07 23:41:59.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-07 23:41:59.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-07 23:41:59.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-07 23:41:59.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-07 23:41:59.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-07 23:41:59.221][biodb::testThat]
biodb.INFO [2025-08-07 23:41:59.222][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-08-07 23:41:59.223][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:41:59.224][biodb::testThat]
biodb.TRACE[2025-08-07 23:41:59.228][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:59.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:59.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.232][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:41:59.234][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-08-07 23:41:59.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:59.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:59.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:59.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:59.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:59.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:59.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:41:59.320][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-08-07 23:41:59.324][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-08-07 23:41:59.344][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:41:59.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-08-07 23:41:59.360][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:41:59.363][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-08-07 23:41:59.390][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:41:59.395][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:41:59.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-07 23:41:59.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:41:59.449][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-07 23:41:59.452][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-08-07 23:41:59.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:59.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:41:59.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.488][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.492][ef$get] fields variable is a list.
biodb.INFO [2025-08-07 23:41:59.511][biodb::testThat]
biodb.INFO [2025-08-07 23:41:59.512][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-08-07 23:41:59.513][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:41:59.515][biodb::testThat]
biodb.TRACE[2025-08-07 23:41:59.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:59.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:59.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:59.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:59.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:41:59.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:41:59.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:41:59.635][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:41:59.638][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:41:59.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-07 23:41:59.642][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:41:59.644][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-08-07 23:41:59.722][biodb::testThat]
biodb.INFO [2025-08-07 23:41:59.723][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-08-07 23:41:59.725][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:41:59.726][biodb::testThat]
biodb.TRACE[2025-08-07 23:41:59.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:59.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:59.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:59.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:59.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.782][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-07 23:41:59.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-07 23:41:59.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-07 23:41:59.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-07 23:41:59.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.792][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-07 23:41:59.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-07 23:41:59.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.797][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-07 23:41:59.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-07 23:41:59.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:59.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:59.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:41:59.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:41:59.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:41:59.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:41:59.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-07 23:41:59.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-07 23:41:59.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-07 23:41:59.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-07 23:41:59.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-07 23:41:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-07 23:41:59.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:41:59.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-07 23:41:59.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-07 23:41:59.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:41:59.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-07 23:41:59.906][biodb::testThat]
biodb.INFO [2025-08-07 23:41:59.907][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-08-07 23:41:59.908][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:41:59.909][biodb::testThat]
biodb.INFO [2025-08-07 23:41:59.933][biodb::testThat]
biodb.INFO [2025-08-07 23:41:59.935][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-08-07 23:41:59.936][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:41:59.937][biodb::testThat]
biodb.INFO [2025-08-07 23:41:59.958][biodb::testThat]
biodb.INFO [2025-08-07 23:41:59.959][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-08-07 23:41:59.960][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:41:59.961][biodb::testThat]
biodb.DEBUG[2025-08-07 23:41:59.966][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-08-07 23:42:00.400][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-08-07 23:42:00.808][biodb::testThat]
biodb.INFO [2025-08-07 23:42:00.810][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-08-07 23:42:00.811][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:00.812][biodb::testThat]
biodb.DEBUG[2025-08-07 23:42:01.094][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-08-07 23:42:01.392][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:01.394][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:01.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.398][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:01.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:01.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.401][ef$get] fields variable is a list.
biodb.INFO [2025-08-07 23:42:01.404][biodb::testThat]
biodb.INFO [2025-08-07 23:42:01.405][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2025-08-07 23:42:01.406][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:01.408][biodb::testThat]
biodb.TRACE[2025-08-07 23:42:01.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:01.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:01.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:01.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:01.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:01.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:01.585][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:01.590][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:01.591][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-07 23:42:01.593][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:01.596][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-07 23:42:01.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:01.662][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:01.664][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-07 23:42:01.666][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:01.668][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-08-07 23:42:01.697][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-07 23:42:01.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-07 23:42:01.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:01.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:01.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:01.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:01.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:01.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:01.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:01.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:01.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:01.745][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:01.750][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:01.751][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-07 23:42:01.753][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:01.797][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-07 23:42:01.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:01.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:01.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:01.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:01.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:01.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:01.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:01.821][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-08-07 23:42:01.867][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:01.869][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-08-07 23:42:01.872][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:01.890][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2025-08-07 23:42:01.892][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:01.893][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:01.895][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:01.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:01.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:01.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:01.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:01.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:01.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:01.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:01.913][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:01.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:01.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:01.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:01.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.923][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:01.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:01.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:01.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:01.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.933][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:01.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:01.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:01.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:01.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:01.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:01.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:01.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:01.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.954][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:01.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:01.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:01.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:01.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:01.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:01.997][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:01.999][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:02.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.003][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:02.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.008][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:02.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.023][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:02.025][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:02.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:02.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.034][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:02.035][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:02.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:02.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:02.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.044][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:02.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:02.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:02.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:02.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:02.107][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-08-07 23:42:02.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:02.132][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:02.137][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:02.138][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-07 23:42:02.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:02.155][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-07 23:42:02.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:02.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:02.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:02.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:02.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:02.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:02.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:02.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:02.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:02.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:02.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:02.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:02.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:02.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:02.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:02.218][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-08-07 23:42:02.224][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:02.227][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-08-07 23:42:02.229][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:02.245][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2025-08-07 23:42:02.247][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:02.248][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:02.250][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:02.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:02.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:02.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:02.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:02.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:02.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:02.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:02.275][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.285][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:02.287][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:02.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.291][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:02.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:02.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.296][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:02.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:02.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:02.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:02.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:02.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:02.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:02.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:02.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:02.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:02.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:02.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.334][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:02.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:02.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.340][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:02.341][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.345][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:02.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.361][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:02.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:02.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:02.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:02.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.377][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:02.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:02.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:02.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:02.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:02.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:02.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:02.450][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-08-07 23:42:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:02.536][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:02.540][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:02.542][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-07 23:42:02.544][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:02.547][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-07 23:42:02.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:02.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:02.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:02.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:02.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:02.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:02.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:02.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:02.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:02.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:02.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:02.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:02.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:02.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:02.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:02.609][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-08-07 23:42:02.610][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:02.612][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-08-07 23:42:02.615][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:02.632][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2025-08-07 23:42:02.634][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:02.635][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:02.637][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:02.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:02.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:02.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:02.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:02.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:02.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:02.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:02.669][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.670][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.679][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:02.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:02.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.685][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:02.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:02.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.688][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:02.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:02.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.695][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:02.697][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:02.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.701][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:02.708][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:02.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.713][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:02.714][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.723][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:02.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:02.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:02.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:02.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.734][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:02.736][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:02.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:02.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:02.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.745][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:02.746][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:02.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:02.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:02.803][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-08-07 23:42:02.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:02.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:02.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:02.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:02.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:02.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:02.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:02.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:02.854][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-08-07 23:42:02.856][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:02.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-08-07 23:42:02.861][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:02.878][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2025-08-07 23:42:02.880][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:02.882][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:02.883][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:02.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:02.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:02.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:02.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:02.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:02.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:02.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:02.920][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.923][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:02.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:02.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.938][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:02.941][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:02.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.947][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:02.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:02.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.956][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:02.958][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:02.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:02.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:02.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:02.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:02.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.976][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:02.977][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:02.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.982][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.983][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:02.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.987][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:02.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:02.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:02.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:02.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:02.999][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:03.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:03.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.009][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:03.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:03.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.015][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:03.016][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:03.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:03.069][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-08-07 23:42:03.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:03.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:03.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:03.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:03.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:03.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:03.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:03.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:03.118][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-08-07 23:42:03.119][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:03.121][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-08-07 23:42:03.123][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:03.140][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2025-08-07 23:42:03.142][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:03.143][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:03.150][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:03.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:03.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:03.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:03.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:03.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:03.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:03.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:03.184][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.188][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.198][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:03.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:03.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:03.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:03.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:03.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:03.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.223][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:03.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:03.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.232][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:03.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:03.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.238][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:03.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:03.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:03.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.249][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:03.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:03.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:03.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:03.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:03.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:03.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:03.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:03.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.270][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:03.271][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:03.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:03.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:03.331][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-08-07 23:42:03.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:03.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:03.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:03.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:03.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:03.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:03.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:03.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:03.387][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-08-07 23:42:03.388][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:03.390][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-08-07 23:42:03.392][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:03.429][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2025-08-07 23:42:03.430][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:03.432][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:03.434][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:03.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:03.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:03.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:03.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:03.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:03.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:03.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:03.479][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:03.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:03.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.489][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:03.491][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:03.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.500][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:03.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.505][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:03.507][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:03.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:03.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.516][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:03.517][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:03.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:03.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:03.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:03.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:03.538][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:03.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:03.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:03.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.547][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:03.548][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:03.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:03.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:03.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:03.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:03.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:03.567][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:03.569][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:03.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:03.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:04.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:04.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.707][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:04.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:04.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:04.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:04.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:04.720][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:04.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:04.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:04.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:04.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:04.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:04.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:04.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:04.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:04.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:04.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:04.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:04.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:04.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:04.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:04.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:04.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:04.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:04.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:04.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:04.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:04.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:04.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:04.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:04.790][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-08-07 23:42:04.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:04.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:04.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:04.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:04.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:04.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:04.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:04.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:04.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:04.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:04.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:04.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:04.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:04.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:04.856][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-08-07 23:42:04.857][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:04.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-08-07 23:42:04.861][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:04.877][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2025-08-07 23:42:04.878][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:04.880][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:04.882][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:04.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:04.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:04.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:04.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:04.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:04.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:04.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:04.913][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:04.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:04.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:04.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:04.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:04.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:04.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.095][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:05.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:05.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:05.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:05.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.106][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:05.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:05.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:05.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:05.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.116][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:05.117][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:05.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:05.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:05.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:05.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:05.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.141][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:05.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:05.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.145][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:05.147][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.151][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:05.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.157][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.168][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:05.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:05.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:05.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:05.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.184][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:05.186][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:05.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.192][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:05.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:05.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.200][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:05.202][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:05.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:05.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:05.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:05.292][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-08-07 23:42:05.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:05.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:05.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:05.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:05.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:05.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:05.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:05.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:05.332][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-08-07 23:42:05.333][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:05.335][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-08-07 23:42:05.338][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:05.354][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2025-08-07 23:42:05.356][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:05.358][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:05.360][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:05.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:05.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:05.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:05.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:05.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:05.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:05.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:05.387][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.399][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:05.401][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:05.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:05.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.410][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:05.412][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:05.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:05.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:05.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:05.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:05.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.433][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.434][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.444][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:05.445][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:05.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.450][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:05.451][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.455][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:05.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.472][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:05.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:05.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:05.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.483][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:05.484][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:05.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:05.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:05.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:05.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:05.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:05.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:05.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:05.559][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-08-07 23:42:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:05.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:05.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:05.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:05.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:05.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:05.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:05.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:05.602][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-08-07 23:42:05.604][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:05.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-08-07 23:42:05.608][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:05.623][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2025-08-07 23:42:05.625][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:05.627][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:05.628][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:05.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:05.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:05.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:05.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:05.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:05.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:05.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:05.647][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.663][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:05.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:05.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:05.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:05.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.673][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:05.674][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:05.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:05.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:05.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:05.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:05.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:05.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.702][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:05.704][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:05.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.707][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:05.709][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.712][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:05.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.717][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.727][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:05.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:05.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:05.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:05.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.737][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:05.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:05.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:05.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:05.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:05.748][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:05.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:05.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:05.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:05.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:05.805][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-08-07 23:42:05.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:05.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:05.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:05.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:05.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:05.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:05.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:05.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:05.860][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-08-07 23:42:05.862][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:05.863][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-08-07 23:42:05.865][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:05.881][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2025-08-07 23:42:05.883][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:05.885][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:05.886][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:05.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:05.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:05.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:05.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:05.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:05.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:05.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:05.903][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.905][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:05.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:05.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.913][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:05.915][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:05.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.918][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:05.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:05.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.923][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:05.924][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:05.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:05.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:05.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:05.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:05.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:05.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.943][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:05.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:05.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:05.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.958][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:05.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:05.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:05.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.968][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:05.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.978][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:05.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:05.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:05.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:05.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.989][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:05.990][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:05.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.992][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:05.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:05.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:05.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:05.999][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:06.000][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:06.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:06.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:06.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:06.057][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-08-07 23:42:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:06.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:06.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:06.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:06.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:06.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:06.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:06.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:06.099][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-08-07 23:42:06.101][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:06.102][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-08-07 23:42:06.104][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:06.120][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2025-08-07 23:42:06.122][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:06.123][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:06.125][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:06.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:06.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:06.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:06.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:06.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:06.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:06.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:06.142][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.153][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:06.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:06.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:06.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:06.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.169][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:06.170][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:06.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:06.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:06.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:06.180][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:06.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:06.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:06.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.199][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:06.201][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:06.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.203][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.204][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:06.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.209][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:06.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.224][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:06.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:06.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:06.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:06.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.234][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:06.235][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:06.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.239][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:06.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:06.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.244][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:06.245][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:06.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:06.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:06.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:06.303][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-08-07 23:42:06.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:06.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:06.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:06.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:06.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:06.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:06.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:06.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:06.338][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-08-07 23:42:06.340][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:06.342][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-08-07 23:42:06.344][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:06.358][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2025-08-07 23:42:06.360][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:06.361][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:06.363][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:06.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:06.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:06.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:06.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:06.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:06.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:06.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:06.396][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.406][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:06.407][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:06.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.411][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:06.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:06.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.416][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:06.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:06.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:06.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:06.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:06.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:06.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.446][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:06.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:06.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.452][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:06.453][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.457][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:06.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.472][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:06.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:06.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:06.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:06.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.482][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:06.483][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:06.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.487][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:06.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:06.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.492][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:06.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:06.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.496][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:06.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:06.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:06.552][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-08-07 23:42:06.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:06.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:06.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:06.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:06.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:06.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:06.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:06.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:06.582][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-08-07 23:42:06.583][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:06.585][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-08-07 23:42:06.587][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:06.603][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2025-08-07 23:42:06.605][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:06.606][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:06.608][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:06.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:06.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:06.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:06.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:06.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:06.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:06.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:06.625][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.635][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:06.636][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:06.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.639][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:06.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:06.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:06.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:06.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:06.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:06.662][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:06.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.665][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:06.672][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:06.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.675][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:06.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.680][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:06.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.685][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.686][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.695][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:06.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:06.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:06.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:06.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.707][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:06.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:06.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.710][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:06.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:06.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:06.718][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:06.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:06.770][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-08-07 23:42:06.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:06.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:06.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:06.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:06.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:06.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:06.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:06.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:06.809][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-08-07 23:42:06.811][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:06.813][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-08-07 23:42:06.815][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:06.859][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2025-08-07 23:42:06.861][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:06.862][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:06.864][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:06.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:06.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:06.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:06.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:06.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:06.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:06.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:06.882][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.892][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:06.893][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:06.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:06.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.903][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:06.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:06.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:06.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:06.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:06.914][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:06.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.919][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:06.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:06.929][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:06.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.933][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:06.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.938][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:06.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:06.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.944][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.953][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:06.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:06.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:06.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.963][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:06.964][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:06.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:06.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:06.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:06.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:06.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:06.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:07.029][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-08-07 23:42:07.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:07.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:07.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:07.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:07.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:07.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:07.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:07.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:07.066][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-08-07 23:42:07.067][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:07.069][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-08-07 23:42:07.071][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:07.092][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2025-08-07 23:42:07.094][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:07.095][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:07.097][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:07.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:07.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:07.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:07.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:07.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:07.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:07.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:07.115][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.126][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:07.127][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:07.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:07.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:07.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.136][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:07.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:07.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:07.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:07.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.147][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:07.148][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:07.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:07.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.158][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:07.173][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:07.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.177][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:07.178][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.182][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:07.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.197][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:07.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:07.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:07.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:07.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.207][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:07.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:07.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.210][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:07.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:07.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:07.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.222][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:07.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:07.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:07.280][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-08-07 23:42:07.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:07.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:07.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:07.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:07.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:07.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:07.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:07.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:07.319][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-08-07 23:42:07.320][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:07.322][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-08-07 23:42:07.324][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:07.340][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2025-08-07 23:42:07.341][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:07.343][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:07.345][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:07.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:07.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:07.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:07.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:07.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:07.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:07.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:07.368][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.378][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:07.379][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:07.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:07.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.389][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:07.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:07.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.394][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:07.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:07.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:07.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:07.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:07.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:07.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.419][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:07.432][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:07.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.436][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:07.437][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.441][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:07.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.456][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:07.458][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:07.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.470][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:07.472][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:07.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:07.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.484][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:07.485][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:07.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:07.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:07.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:07.544][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-08-07 23:42:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:07.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:07.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:07.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:07.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:07.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:07.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:07.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:07.575][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-08-07 23:42:07.577][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:07.579][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-08-07 23:42:07.581][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:07.595][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2025-08-07 23:42:07.597][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:07.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:07.600][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:07.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:07.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:07.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:07.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:07.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:07.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:07.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:07.628][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.630][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.638][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:07.640][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:07.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.643][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:07.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:07.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.648][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:07.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:07.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:07.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:07.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:07.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:07.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:07.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:07.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:07.680][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:07.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.682][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.689][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:07.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.694][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:07.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.708][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:07.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:07.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:07.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.718][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:07.720][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:07.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:07.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:07.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.728][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:07.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:07.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:07.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:07.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:07.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:07.786][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-08-07 23:42:07.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:07.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:07.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:07.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:07.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:07.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:07.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:07.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:07.836][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-08-07 23:42:07.838][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:07.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-08-07 23:42:07.843][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:07.862][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2025-08-07 23:42:07.864][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:07.865][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:07.867][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:07.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:07.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:07.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:07.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:07.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:07.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:07.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:07.901][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.902][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:07.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:07.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.911][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:07.912][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:07.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.916][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:07.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:07.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.921][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:07.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:07.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:07.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:07.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:07.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:07.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:07.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:07.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:07.952][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:07.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.956][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:07.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.961][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:07.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:07.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.976][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:07.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:07.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:07.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:07.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.986][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:07.987][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:07.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:07.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:07.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:07.997][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:07.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:07.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:08.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:08.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.054][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-08-07 23:42:08.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:08.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:08.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:08.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:08.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:08.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:08.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:08.084][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-08-07 23:42:08.085][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:08.087][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-08-07 23:42:08.089][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:08.105][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2025-08-07 23:42:08.107][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:08.108][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:08.110][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:08.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:08.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:08.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:08.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:08.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:08.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:08.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:08.127][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.137][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:08.138][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:08.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:08.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.147][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:08.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:08.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:08.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:08.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:08.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:08.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:08.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:08.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:08.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.182][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:08.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.193][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:08.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.197][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.207][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:08.209][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:08.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.211][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:08.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:08.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.217][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:08.218][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:08.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:08.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.227][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:08.228][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:08.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:08.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:08.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.285][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-08-07 23:42:08.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:08.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:08.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:08.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:08.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:08.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:08.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:08.327][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-08-07 23:42:08.328][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:08.330][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-08-07 23:42:08.332][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:08.348][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-08-07 23:42:08.350][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:08.352][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:08.353][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:08.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:08.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:08.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:08.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:08.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:08.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:08.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:08.380][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.382][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.392][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:08.394][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:08.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:08.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:08.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.404][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:08.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:08.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:08.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:08.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.414][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:08.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:08.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.425][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.426][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.435][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:08.436][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:08.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.440][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:08.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.445][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:08.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.450][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.451][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.460][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:08.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:08.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:08.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:08.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.471][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:08.472][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:08.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.476][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:08.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:08.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.481][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:08.482][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:08.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:08.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:08.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.553][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-08-07 23:42:08.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:08.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:08.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:08.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:08.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:08.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:08.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:08.584][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-08-07 23:42:08.585][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:08.587][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-08-07 23:42:08.589][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:08.607][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-08-07 23:42:08.609][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:08.610][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:08.612][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:08.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:08.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:08.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:08.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:08.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:08.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:08.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:08.631][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.641][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:08.643][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:08.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.646][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:08.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:08.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:08.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:08.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:08.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:08.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:08.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:08.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:08.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:08.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:08.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.682][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:08.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:08.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.687][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:08.688][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.697][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:08.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:08.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.712][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:08.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:08.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:08.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.722][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:08.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:08.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:08.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:08.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:08.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:08.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.791][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-08-07 23:42:08.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.854][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:08.857][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:08.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-07 23:42:08.861][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:08.864][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-07 23:42:08.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:08.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:08.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:08.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:08.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:08.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:08.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:08.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:08.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:08.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:08.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:08.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:08.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:08.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:08.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:08.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:08.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:08.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:08.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:08.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:08.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:08.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:08.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:08.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:08.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:08.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:08.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:08.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:09.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:09.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:09.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:09.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:09.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:09.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:09.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:09.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:09.720][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:09.724][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:09.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-08-07 23:42:09.727][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:09.815][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-08-07 23:42:09.819][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:09.823][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:09.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-08-07 23:42:09.827][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:09.893][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-08-07 23:42:09.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:09.917][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-08-07 23:42:09.919][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:09.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-08-07 23:42:09.923][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:09.957][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-08-07 23:42:09.959][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:09.960][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:09.962][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:09.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:09.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:09.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:09.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:09.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:09.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:09.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:09.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:09.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:09.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:09.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:09.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:09.996][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:09.997][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:09.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.001][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:10.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:10.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.006][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:10.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:10.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.010][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:10.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:10.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:10.017][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:10.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:10.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:10.027][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:10.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:10.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:10.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.036][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:10.037][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:10.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.041][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:10.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:10.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.046][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:10.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:10.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.050][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.051][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:10.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:10.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.056][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.066][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:10.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:10.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.070][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:10.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:10.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.076][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:10.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:10.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.081][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:10.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:10.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.086][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:10.087][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:10.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:10.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:10.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.147][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-08-07 23:42:10.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:10.261][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-08-07 23:42:10.262][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:10.264][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-08-07 23:42:10.266][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:10.283][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-08-07 23:42:10.285][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:10.286][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:10.288][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:10.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.313][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.323][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:10.325][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:10.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.328][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:10.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:10.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.333][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:10.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:10.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:10.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:10.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.343][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:10.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:10.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:10.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:10.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.358][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:10.360][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:10.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:10.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:10.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.373][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:10.375][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:10.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.381][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:10.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:10.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.387][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:10.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:10.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.397][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.410][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:10.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:10.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.413][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:10.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:10.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.420][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:10.421][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:10.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:10.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:10.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:10.431][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:10.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:10.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:10.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:10.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:10.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:10.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.501][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-08-07 23:42:10.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.592][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:10.596][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:10.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-07 23:42:10.600][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:10.602][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-07 23:42:10.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:10.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:10.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:10.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:10.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:10.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:10.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:10.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:10.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:10.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:10.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.439][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:11.443][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:11.445][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-07 23:42:11.447][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:11.450][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-07 23:42:11.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:11.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:11.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:11.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:11.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:11.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:11.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:11.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:11.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:11.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:11.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:11.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-07 23:42:12.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-07 23:42:12.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-07 23:42:12.329][biodb::testThat]
biodb.INFO [2025-08-07 23:42:12.331][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-08-07 23:42:12.332][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:12.333][biodb::testThat]
biodb.TRACE[2025-08-07 23:42:12.337][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-07 23:42:12.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-07 23:42:12.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:12.400][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:12.403][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:12.405][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-07 23:42:12.406][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:12.409][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-07 23:42:12.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.448][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:12.452][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:12.453][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-07 23:42:12.455][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:12.457][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-07 23:42:12.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:12.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.527][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-07 23:42:12.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.560][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:12.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:12.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:12.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.576][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.581][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:12.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.605][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-07 23:42:12.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.646][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.647][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:12.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:12.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:12.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.662][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.668][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:12.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-07 23:42:12.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.725][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:12.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:12.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:12.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.733][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.741][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:12.742][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.747][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:12.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.764][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-07 23:42:12.765][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-07 23:42:12.766][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-07 23:42:12.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:12.892][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:12.896][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:12.898][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-07 23:42:12.900][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:12.904][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-07 23:42:12.908][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:12.912][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:12.914][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-07 23:42:12.916][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:12.920][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-07 23:42:12.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:12.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:12.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:12.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:12.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:12.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:12.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:12.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:12.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:12.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:13.091][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-07 23:42:13.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.137][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:13.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:13.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:13.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.153][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.159][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:13.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.175][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-07 23:42:13.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.229][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:13.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:13.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:13.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.253][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.259][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.276][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-07 23:42:13.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.325][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:13.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:13.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:13.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.341][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.346][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:13.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-07 23:42:13.363][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-07 23:42:13.364][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-07 23:42:13.387][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-07 23:42:13.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-07 23:42:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-07 23:42:13.407][biodb::testThat]
biodb.INFO [2025-08-07 23:42:13.408][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-08-07 23:42:13.410][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:13.411][biodb::testThat]
biodb.TRACE[2025-08-07 23:42:13.415][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-07 23:42:13.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-07 23:42:13.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:13.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:13.458][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:13.462][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:13.464][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-07 23:42:13.465][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:13.468][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-07 23:42:13.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:13.511][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:13.514][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:13.516][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-07 23:42:13.518][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:13.520][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-07 23:42:13.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:13.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:13.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:13.605][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-07 23:42:13.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.639][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.641][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:13.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:13.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:13.644][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.657][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.663][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:13.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-07 23:42:13.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.724][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:13.725][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:13.726][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:13.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.738][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.739][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.745][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:13.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.762][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-07 23:42:13.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.796][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:13.797][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:13.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:13.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.814][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:13.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.824][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:13.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:13.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.858][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-07 23:42:13.860][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-07 23:42:13.861][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-07 23:42:13.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:13.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:13.937][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:13.940][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:13.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-07 23:42:13.943][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:13.946][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-07 23:42:13.950][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:13.953][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:13.955][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-07 23:42:13.956][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:13.959][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-07 23:42:13.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:13.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:13.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:13.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:13.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:13.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:13.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:13.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:13.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:13.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:13.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:14.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:14.061][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-07 23:42:14.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.090][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:14.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:14.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:14.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.103][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.104][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.105][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.111][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:14.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.127][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-07 23:42:14.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.160][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:14.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:14.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:14.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.175][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:14.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.197][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-07 23:42:14.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.222][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.223][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:14.224][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:14.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:14.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.228][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.238][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.244][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:14.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-07 23:42:14.261][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-07 23:42:14.263][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-07 23:42:14.280][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-07 23:42:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-07 23:42:14.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-07 23:42:14.299][biodb::testThat]
biodb.INFO [2025-08-07 23:42:14.300][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-08-07 23:42:14.302][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:14.303][biodb::testThat]
biodb.TRACE[2025-08-07 23:42:14.307][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-07 23:42:14.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-07 23:42:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:14.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:14.376][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:14.386][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:14.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-07 23:42:14.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:14.392][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-07 23:42:14.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:14.432][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:14.435][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:14.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-07 23:42:14.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:14.441][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-07 23:42:14.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:14.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:14.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:14.523][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-07 23:42:14.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.559][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:14.560][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:14.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:14.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.575][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:14.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-07 23:42:14.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.634][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:14.636][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:14.637][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:14.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.649][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.651][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.657][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:14.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.674][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-07 23:42:14.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.707][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:14.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:14.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:14.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.722][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:14.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.728][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:14.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:14.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.744][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-07 23:42:14.745][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-07 23:42:14.746][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-07 23:42:14.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:14.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:14.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:14.835][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:14.837][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-07 23:42:14.838][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:14.841][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-07 23:42:14.845][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:14.848][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:14.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-07 23:42:14.852][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:14.854][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-07 23:42:14.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:14.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:14.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:14.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:14.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:14.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:14.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:14.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:14.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:14.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:14.990][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-07 23:42:14.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:14.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:14.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:15.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:15.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:15.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:15.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:15.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.033][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:15.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:15.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:15.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.048][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.050][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.056][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:15.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-07 23:42:15.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:15.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:15.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:15.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:15.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:15.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:15.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:15.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.114][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:15.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:15.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:15.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.131][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.137][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:15.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-07 23:42:15.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:15.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:15.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:15.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:15.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:15.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:15.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:15.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.206][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-07 23:42:15.208][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-07 23:42:15.210][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-07 23:42:15.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.227][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.228][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-07 23:42:15.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.233][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.235][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-07 23:42:15.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.252][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-07 23:42:15.253][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-07 23:42:15.254][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-07 23:42:15.298][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-07 23:42:15.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-07 23:42:15.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-07 23:42:15.314][biodb::testThat]
biodb.INFO [2025-08-07 23:42:15.315][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-08-07 23:42:15.317][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:15.318][biodb::testThat]
biodb.DEBUG[2025-08-07 23:42:15.320][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-08-07 23:42:15.322][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:15.324][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-08-07 23:42:15.326][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:15.341][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2025-08-07 23:42:15.344][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:15.347][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:15.349][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:15.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:15.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:15.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:15.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:15.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:15.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:15.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:15.377][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.380][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.388][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:15.390][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:15.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.393][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:15.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:15.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:15.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:15.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:15.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:15.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:15.413][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:15.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.417][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:15.418][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:15.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:15.424][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:15.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.427][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:15.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:15.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.433][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:15.434][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:15.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:15.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:15.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:15.495][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2025-08-07 23:42:15.496][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-08-07 23:42:15.528][biodb::testThat]
biodb.INFO [2025-08-07 23:42:15.529][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-08-07 23:42:15.531][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:15.532][biodb::testThat]
biodb.DEBUG[2025-08-07 23:42:15.571][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2025-08-07 23:42:15.572][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2025-08-07 23:42:15.574][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-08-07 23:42:15.576][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2025-08-07 23:42:15.578][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-08-07 23:42:15.623][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-08-07 23:42:15.624][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:15.626][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-08-07 23:42:15.628][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:15.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:15.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:15.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:15.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:15.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:15.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:15.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:15.669][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.671][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.681][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:15.682][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:15.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.686][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:15.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:15.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:15.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:15.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:15.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:15.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.704][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:15.705][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:15.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.710][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:15.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:15.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.715][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:15.717][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:15.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.721][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:15.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:15.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.727][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:15.728][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:15.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:15.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:15.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:15.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:15.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:15.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:15.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:15.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:15.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:15.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:15.853][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.869][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:15.871][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:15.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.875][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.876][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:15.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:15.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:15.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:15.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:15.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:15.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:15.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:15.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:15.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:15.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:15.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:15.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:15.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:15.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:15.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:15.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.921][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:15.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:15.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.926][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:15.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:15.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.932][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:15.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:15.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.937][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:15.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:15.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:15.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.948][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:15.949][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:15.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:15.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:15.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.959][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:15.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:15.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.964][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:15.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:15.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:15.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:15.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:15.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:15.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:15.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:15.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:15.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:16.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:16.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:16.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:16.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:16.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:16.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:16.038][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.049][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:16.050][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:16.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.053][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.054][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:16.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:16.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.060][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:16.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:16.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:16.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:16.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:16.072][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:16.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:16.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:16.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:16.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:16.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:16.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:16.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.093][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:16.094][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:16.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.101][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:16.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:16.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.110][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:16.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:16.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.117][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:16.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:16.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:16.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:16.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:16.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:16.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.134][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:16.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:16.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:16.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:16.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.146][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:16.147][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:16.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:16.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:16.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.157][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:16.158][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:16.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:16.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:16.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:16.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:16.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:16.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:16.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:16.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:16.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:16.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:16.269][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2025-08-07 23:42:16.270][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-08-07 23:42:16.271][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2025-08-07 23:42:16.321][biodb::testThat]
biodb.INFO [2025-08-07 23:42:16.323][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-08-07 23:42:16.324][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:16.326][biodb::testThat]
biodb.INFO [2025-08-07 23:42:16.364][biodb::testThat]
biodb.INFO [2025-08-07 23:42:16.366][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-08-07 23:42:16.367][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:16.368][biodb::testThat]
biodb.INFO [2025-08-07 23:42:16.396][biodb::testThat]
biodb.INFO [2025-08-07 23:42:16.397][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-08-07 23:42:16.398][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:16.400][biodb::testThat]
biodb.DEBUG[2025-08-07 23:42:16.403][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:16.409][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:16.410][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2025-08-07 23:42:16.412][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:16.429][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2025-08-07 23:42:16.457][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:16.458][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:16.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:16.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:16.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:16.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:16.466][ef$get] fields variable is a list.
biodb.INFO [2025-08-07 23:42:16.469][biodb::testThat]
biodb.INFO [2025-08-07 23:42:16.470][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2025-08-07 23:42:16.471][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:16.473][biodb::testThat]
biodb.ERROR[2025-08-07 23:42:16.499][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2025-08-07 23:42:16.515][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2025-08-07 23:42:16.537][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-07 23:42:16.540][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-08-07 23:42:16.541][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-07 23:42:16.542][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-07 23:42:16.545][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:16.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:16.547][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.550][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-07 23:42:16.573][biodb::testContext]
biodb.INFO [2025-08-07 23:42:16.575][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-07 23:42:16.576][biodb::testContext] Test context - Test conversions
biodb.INFO [2025-08-07 23:42:16.578][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-07 23:42:16.579][biodb::testContext]
biodb.INFO [2025-08-07 23:42:16.582][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-07 23:42:16.584][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-07 23:42:16.589][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:42:16.591][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-07 23:42:16.592][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-07 23:42:16.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.598][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-07 23:42:16.600][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-07 23:42:16.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.607][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-07 23:42:16.610][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-07 23:42:16.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.617][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-07 23:42:16.619][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-07 23:42:16.621][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-07 23:42:16.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.628][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-07 23:42:16.630][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-07 23:42:16.632][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-07 23:42:16.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.640][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-07 23:42:16.642][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-07 23:42:16.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.649][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-07 23:42:16.651][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-07 23:42:16.653][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-07 23:42:16.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.661][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-07 23:42:16.663][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-07 23:42:16.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.667][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-07 23:42:16.668][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-07 23:42:16.670][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-07 23:42:16.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.674][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-07 23:42:16.675][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-07 23:42:16.676][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-07 23:42:16.678][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-07 23:42:16.679][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-07 23:42:16.680][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-07 23:42:16.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.685][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-07 23:42:16.686][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-07 23:42:16.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.690][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-07 23:42:16.692][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-07 23:42:16.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.696][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-07 23:42:16.697][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-07 23:42:16.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.702][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-07 23:42:16.703][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-07 23:42:16.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.708][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-07 23:42:16.709][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-07 23:42:16.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.713][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-07 23:42:16.714][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-07 23:42:16.718][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-07 23:42:16.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.722][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-07 23:42:16.723][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-07 23:42:16.725][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-07 23:42:16.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.729][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-07 23:42:16.731][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.733][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-07 23:42:16.734][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.735][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:16.736][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.738][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.739][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.740][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.741][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-07 23:42:16.743][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:16.744][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.745][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-07 23:42:16.746][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:16.748][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.749][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.750][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:42:16.750][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:42:16.750][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:42:16.750][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-07 23:42:16.750][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-07 23:42:16.751][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:16.753][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:16.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:16.755][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:16.756][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:16.764][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:16.766][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.767][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.768][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:16.769][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:16.771][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.772][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.773][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-07 23:42:16.775][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.776][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-07 23:42:16.777][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.779][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:16.780][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.781][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.782][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.784][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.785][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-07 23:42:16.786][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:16.787][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.788][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-07 23:42:16.790][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:16.791][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.792][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.793][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:42:16.793][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:42:16.793][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:42:16.793][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-07 23:42:16.793][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-07 23:42:16.794][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:16.796][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:16.797][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:16.798][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:16.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:16.800][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:16.801][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.803][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.804][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:16.805][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:16.806][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.807][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.809][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-07 23:42:16.810][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.812][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-07 23:42:16.813][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.814][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:16.815][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.817][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.818][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.819][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.820][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-07 23:42:16.821][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:16.823][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.824][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-07 23:42:16.825][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:16.826][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.827][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.829][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.830][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:16.831][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:16.832][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:16.833][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:16.834][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:16.835][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:16.837][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.838][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.839][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:16.840][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:16.841][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.842][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.844][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-07 23:42:16.846][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.847][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-07 23:42:16.848][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.849][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:16.851][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.852][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.853][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.854][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.855][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-07 23:42:16.857][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:16.858][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.859][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-07 23:42:16.860][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:16.861][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.863][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:16.864][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.865][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:16.866][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:16.867][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:16.868][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:16.870][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:16.871][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:16.872][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:16.873][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.874][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:16.875][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:16.877][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:16.878][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:16.880][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:42:16.881][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:16.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:16.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:16.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:16.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:16.977][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-07 23:42:16.979][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-07 23:42:16.981][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-07 23:42:16.982][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-07 23:42:16.984][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-07 23:42:16.985][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-07 23:42:16.987][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-07 23:42:16.989][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-07 23:42:16.990][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-07 23:42:16.992][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-07 23:42:16.993][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-07 23:42:16.995][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-07 23:42:16.996][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-07 23:42:16.998][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-07 23:42:17.000][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-07 23:42:17.001][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-07 23:42:17.003][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-07 23:42:17.004][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-07 23:42:17.006][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-07 23:42:17.008][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-07 23:42:17.009][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-07 23:42:17.011][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-07 23:42:17.012][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-07 23:42:17.014][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-07 23:42:17.016][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-07 23:42:17.017][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-07 23:42:17.019][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-07 23:42:17.020][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-07 23:42:17.022][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-07 23:42:17.023][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-07 23:42:17.025][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-07 23:42:17.026][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-07 23:42:17.028][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-07 23:42:17.030][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-07 23:42:17.031][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-07 23:42:17.033][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-07 23:42:17.034][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-07 23:42:17.036][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-07 23:42:17.038][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-07 23:42:17.039][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-07 23:42:17.041][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-07 23:42:17.042][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-07 23:42:17.044][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-07 23:42:17.046][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-07 23:42:17.047][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-07 23:42:17.049][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-07 23:42:17.050][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-07 23:42:17.052][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-07 23:42:17.053][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-07 23:42:17.055][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-07 23:42:17.057][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-07 23:42:17.058][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-07 23:42:17.060][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-07 23:42:17.061][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-07 23:42:17.063][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-07 23:42:17.064][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-07 23:42:17.066][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-07 23:42:17.067][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-07 23:42:17.069][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-07 23:42:17.071][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-07 23:42:17.072][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-07 23:42:17.074][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-07 23:42:17.075][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-07 23:42:17.077][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-07 23:42:17.078][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-07 23:42:17.080][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-07 23:42:17.082][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-07 23:42:17.083][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-07 23:42:17.085][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-07 23:42:17.086][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-07 23:42:17.088][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-07 23:42:17.089][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-07 23:42:17.091][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-07 23:42:17.093][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-07 23:42:17.094][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-07 23:42:17.096][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-07 23:42:17.097][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-07 23:42:17.099][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-07 23:42:17.101][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-07 23:42:17.102][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-07 23:42:17.104][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-07 23:42:17.105][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-07 23:42:17.107][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-07 23:42:17.108][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-07 23:42:17.111][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-07 23:42:17.112][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:42:17.113][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.116][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.301][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-07 23:42:17.303][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-07 23:42:17.305][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:17.306][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-07 23:42:17.307][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:17.308][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:17.310][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:17.311][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:17.312][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:17.313][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-07 23:42:17.314][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-07 23:42:17.316][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:17.317][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:17.318][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-07 23:42:17.319][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-07 23:42:17.321][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-07 23:42:17.322][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:17.323][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:42:17.323][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:42:17.323][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:42:17.325][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-07 23:42:17.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:17.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:17.328][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:17.329][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:17.330][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:17.331][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:17.333][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-07 23:42:17.333][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-07 23:42:17.334][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:17.335][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:17.336][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:17.337][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-07 23:42:17.337][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-07 23:42:17.339][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-07 23:42:17.341][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-07 23:42:17.343][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-07 23:42:17.344][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-07 23:42:17.346][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-07 23:42:17.348][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-07 23:42:17.351][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-07 23:42:17.352][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-08-07 23:42:17.353][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-08-07 23:42:17.355][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-08-07 23:42:17.357][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-07 23:42:17.358][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-07 23:42:17.360][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-08-07 23:42:17.361][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-07 23:42:17.363][biodb::testThat]
biodb.INFO [2025-08-07 23:42:17.364][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2025-08-07 23:42:17.365][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:17.366][biodb::testThat]
biodb.DEBUG[2025-08-07 23:42:17.370][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-08-07 23:42:17.375][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:17.377][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-08-07 23:42:17.379][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:17.382][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-08-07 23:42:17.386][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:17.390][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:17.391][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-08-07 23:42:17.393][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:17.408][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-08-07 23:42:17.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:17.430][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:17.432][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-08-07 23:42:17.433][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:17.449][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-08-07 23:42:17.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.514][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:17.517][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:17.519][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-08-07 23:42:17.521][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:17.523][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-08-07 23:42:17.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.549][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:17.552][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:17.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-08-07 23:42:17.556][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:17.558][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-08-07 23:42:17.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.615][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:17.619][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:17.621][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-08-07 23:42:17.622][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:17.625][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-08-07 23:42:17.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.642][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:17.645][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:17.647][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-08-07 23:42:17.649][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:17.651][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-08-07 23:42:17.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.677][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:17.682][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:17.683][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2025-08-07 23:42:17.685][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:17.701][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2025-08-07 23:42:17.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-07 23:42:17.766][biodb::testThat]
biodb.INFO [2025-08-07 23:42:17.768][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2025-08-07 23:42:17.770][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:17.771][biodb::testThat]
biodb.DEBUG[2025-08-07 23:42:17.775][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:17.779][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:17.781][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2025-08-07 23:42:17.789][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:17.805][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2025-08-07 23:42:17.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.828][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:17.831][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:17.833][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2025-08-07 23:42:17.835][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:17.838][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2025-08-07 23:42:17.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:17.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-07 23:42:17.878][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-07 23:42:17.880][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-08-07 23:42:17.881][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-07 23:42:17.882][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-07 23:42:17.883][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:17.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:17.886][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:17.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:17.888][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-07 23:42:17.894][biodb::testContext]
biodb.INFO [2025-08-07 23:42:17.895][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-07 23:42:17.897][biodb::testContext] Test context - Test web services
biodb.INFO [2025-08-07 23:42:17.898][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-07 23:42:17.899][biodb::testContext]
biodb.INFO [2025-08-07 23:42:17.902][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-07 23:42:17.904][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-07 23:42:17.909][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:42:17.911][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-07 23:42:17.912][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-07 23:42:17.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.916][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-07 23:42:17.917][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-07 23:42:17.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.922][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-07 23:42:17.923][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-07 23:42:17.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.928][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-07 23:42:17.929][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-07 23:42:17.930][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-07 23:42:17.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.934][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-07 23:42:17.936][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-07 23:42:17.937][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-07 23:42:17.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.941][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-07 23:42:17.943][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-07 23:42:17.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.947][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-07 23:42:17.948][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-07 23:42:17.950][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-07 23:42:17.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.954][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-07 23:42:17.955][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-07 23:42:17.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.960][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-07 23:42:17.961][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-07 23:42:17.962][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-07 23:42:17.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.967][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-07 23:42:17.968][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-07 23:42:17.969][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-07 23:42:17.971][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-07 23:42:17.972][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-07 23:42:17.973][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-07 23:42:17.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.978][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-07 23:42:17.979][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-07 23:42:17.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.983][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-07 23:42:17.985][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-07 23:42:17.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.989][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-07 23:42:17.991][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-07 23:42:17.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:17.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:17.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:17.998][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-07 23:42:18.000][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-07 23:42:18.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.006][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-07 23:42:18.008][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-07 23:42:18.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.012][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-07 23:42:18.013][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-07 23:42:18.017][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-07 23:42:18.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.021][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-07 23:42:18.022][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-07 23:42:18.024][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-07 23:42:18.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.028][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-07 23:42:18.030][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.032][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-07 23:42:18.033][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.034][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:18.035][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.036][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.038][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.039][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.040][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-07 23:42:18.041][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:18.043][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.044][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-07 23:42:18.045][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:18.046][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.048][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.049][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:42:18.049][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:42:18.049][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:42:18.049][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-07 23:42:18.049][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-07 23:42:18.050][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:18.052][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.053][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.054][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:18.055][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.056][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.057][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.059][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.060][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:18.061][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:18.062][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.063][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.065][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-07 23:42:18.067][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.068][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-07 23:42:18.069][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.070][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:18.072][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.073][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.074][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.075][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.077][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-07 23:42:18.078][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:18.079][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.080][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-07 23:42:18.081][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:18.083][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.084][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.085][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:42:18.085][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:42:18.085][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:42:18.085][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-07 23:42:18.085][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-07 23:42:18.087][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:18.088][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.089][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.090][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:18.091][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.092][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.093][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.095][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.096][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:18.097][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:18.098][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.099][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.101][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-07 23:42:18.103][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.104][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-07 23:42:18.105][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.107][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:18.108][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.109][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.110][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.111][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.113][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-07 23:42:18.114][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:18.115][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.116][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-07 23:42:18.118][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:18.119][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.120][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.121][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.123][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:18.124][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.125][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.126][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:18.127][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.128][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.130][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.131][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.132][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:18.133][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:18.134][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.135][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.137][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-07 23:42:18.139][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.140][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-07 23:42:18.141][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.142][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:18.144][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.145][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.146][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.147][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.149][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-07 23:42:18.150][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:18.151][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.152][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-07 23:42:18.153][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:18.155][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.156][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.157][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.158][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:18.160][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.161][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.162][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:18.163][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.164][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.165][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.167][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.168][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:18.169][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:18.170][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.171][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.173][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:42:18.174][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.278][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-07 23:42:18.280][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-07 23:42:18.281][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-07 23:42:18.283][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-07 23:42:18.284][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-07 23:42:18.286][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-07 23:42:18.288][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-07 23:42:18.289][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-07 23:42:18.291][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-07 23:42:18.292][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-07 23:42:18.294][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-07 23:42:18.295][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-07 23:42:18.297][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-07 23:42:18.298][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-07 23:42:18.300][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-07 23:42:18.301][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-07 23:42:18.303][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-07 23:42:18.305][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-07 23:42:18.306][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-07 23:42:18.308][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-07 23:42:18.309][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-07 23:42:18.311][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-07 23:42:18.312][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-07 23:42:18.314][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-07 23:42:18.316][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-07 23:42:18.317][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-07 23:42:18.319][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-07 23:42:18.320][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-07 23:42:18.322][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-07 23:42:18.323][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-07 23:42:18.325][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-07 23:42:18.327][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-07 23:42:18.328][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-07 23:42:18.330][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-07 23:42:18.331][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-07 23:42:18.333][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-07 23:42:18.334][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-07 23:42:18.336][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-07 23:42:18.337][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-07 23:42:18.339][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-07 23:42:18.341][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-07 23:42:18.342][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-07 23:42:18.344][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-07 23:42:18.345][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-07 23:42:18.347][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-07 23:42:18.349][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-07 23:42:18.350][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-07 23:42:18.352][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-07 23:42:18.353][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-07 23:42:18.355][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-07 23:42:18.356][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-07 23:42:18.358][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-07 23:42:18.360][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-07 23:42:18.361][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-07 23:42:18.363][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-07 23:42:18.364][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-07 23:42:18.366][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-07 23:42:18.368][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-07 23:42:18.369][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-07 23:42:18.371][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-07 23:42:18.372][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-07 23:42:18.374][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-07 23:42:18.376][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-07 23:42:18.377][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-07 23:42:18.379][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-07 23:42:18.380][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-07 23:42:18.382][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-07 23:42:18.384][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-07 23:42:18.385][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-07 23:42:18.387][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-07 23:42:18.388][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-07 23:42:18.390][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-07 23:42:18.392][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-07 23:42:18.393][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-07 23:42:18.395][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-07 23:42:18.396][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-07 23:42:18.398][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-07 23:42:18.399][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-07 23:42:18.401][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-07 23:42:18.403][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-07 23:42:18.404][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-07 23:42:18.406][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-07 23:42:18.407][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-07 23:42:18.409][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-07 23:42:18.412][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-07 23:42:18.413][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:42:18.414][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.416][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.552][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-07 23:42:18.554][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-07 23:42:18.556][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.557][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.558][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.560][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:18.561][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.562][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.563][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.565][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-07 23:42:18.566][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-07 23:42:18.567][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:18.568][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.570][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-07 23:42:18.571][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-07 23:42:18.572][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-07 23:42:18.574][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.575][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:42:18.575][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:42:18.575][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:42:18.576][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-07 23:42:18.577][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.578][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.579][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:18.581][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.582][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.583][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.584][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-07 23:42:18.584][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-07 23:42:18.585][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:18.586][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:18.587][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.589][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-07 23:42:18.589][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-07 23:42:18.590][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-07 23:42:18.592][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-07 23:42:18.594][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-07 23:42:18.595][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-07 23:42:18.597][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-07 23:42:18.599][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-07 23:42:18.602][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-07 23:42:18.604][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-08-07 23:42:18.605][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-08-07 23:42:18.607][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-08-07 23:42:18.608][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-07 23:42:18.610][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-07 23:42:18.611][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-08-07 23:42:18.612][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-07 23:42:18.614][biodb::testThat]
biodb.INFO [2025-08-07 23:42:18.616][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2025-08-07 23:42:18.617][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:18.618][biodb::testThat]
biodb.DEBUG[2025-08-07 23:42:18.621][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-08-07 23:42:18.626][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:18.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-08-07 23:42:18.629][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:18.632][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-08-07 23:42:18.636][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:18.640][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:18.642][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-08-07 23:42:18.643][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:18.661][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2025-08-07 23:42:18.686][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-07 23:42:18.688][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-08-07 23:42:18.689][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-07 23:42:18.690][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-07 23:42:18.691][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:18.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:18.694][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.696][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-07 23:42:18.702][biodb::testContext]
biodb.INFO [2025-08-07 23:42:18.703][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-07 23:42:18.705][biodb::testContext] Test context - Non regression tests
biodb.INFO [2025-08-07 23:42:18.706][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-07 23:42:18.707][biodb::testContext]
biodb.INFO [2025-08-07 23:42:18.710][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-07 23:42:18.712][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-07 23:42:18.717][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:42:18.719][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-07 23:42:18.720][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-07 23:42:18.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.724][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-07 23:42:18.726][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-07 23:42:18.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.730][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-07 23:42:18.731][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-07 23:42:18.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.736][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-07 23:42:18.737][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-07 23:42:18.738][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-07 23:42:18.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.743][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-07 23:42:18.744][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-07 23:42:18.745][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-07 23:42:18.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.750][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-07 23:42:18.752][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-07 23:42:18.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.756][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-07 23:42:18.758][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-07 23:42:18.759][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-07 23:42:18.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.763][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-07 23:42:18.765][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-07 23:42:18.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.769][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-07 23:42:18.770][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-07 23:42:18.772][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-07 23:42:18.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.776][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-07 23:42:18.777][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-07 23:42:18.779][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-07 23:42:18.780][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-07 23:42:18.781][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-07 23:42:18.782][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-07 23:42:18.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.787][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-07 23:42:18.788][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-07 23:42:18.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.793][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-07 23:42:18.794][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-07 23:42:18.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.798][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-07 23:42:18.800][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-07 23:42:18.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.804][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-07 23:42:18.806][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-07 23:42:18.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.810][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-07 23:42:18.811][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-07 23:42:18.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.816][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-07 23:42:18.817][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-07 23:42:18.820][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-07 23:42:18.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.825][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-07 23:42:18.826][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-07 23:42:18.827][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-07 23:42:18.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.832][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-07 23:42:18.834][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.835][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-07 23:42:18.837][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.838][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:18.839][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.840][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.841][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.843][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.844][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-07 23:42:18.845][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:18.846][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.848][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-07 23:42:18.849][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:18.850][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.851][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.853][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:42:18.853][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:42:18.853][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:42:18.853][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-07 23:42:18.853][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-07 23:42:18.854][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:18.855][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.856][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.857][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:18.859][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.860][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.861][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.862][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.863][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:18.864][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:18.866][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.867][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.868][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-07 23:42:18.870][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.871][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-07 23:42:18.873][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.874][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:18.875][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.876][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.878][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.879][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.880][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-07 23:42:18.881][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:18.883][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.884][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-07 23:42:18.885][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:18.886][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.887][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.889][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:42:18.889][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:42:18.889][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:42:18.889][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-07 23:42:18.889][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-07 23:42:18.890][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:18.891][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.892][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.893][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:18.895][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.896][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.897][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.898][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.899][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:18.900][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:18.902][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.903][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.904][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-07 23:42:18.906][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.907][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-07 23:42:18.909][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.910][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:18.911][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.912][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.914][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.915][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.916][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-07 23:42:18.917][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:18.918][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.920][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-07 23:42:18.921][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:18.922][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.923][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.925][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.926][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:18.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.928][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.929][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:18.931][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.932][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.933][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.934][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.935][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:18.936][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:18.938][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.939][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.940][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-07 23:42:18.942][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.943][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-07 23:42:18.945][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.946][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:18.947][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.948][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.949][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.951][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.952][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-07 23:42:18.953][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:18.954][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.956][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-07 23:42:18.957][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:18.958][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.959][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:18.961][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.962][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-07 23:42:18.963][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.964][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.965][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:18.966][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:18.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:18.969][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:18.970][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.971][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:18.972][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:18.973][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:18.975][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-07 23:42:18.976][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:42:18.977][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:18.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:18.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:18.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:18.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:18.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.075][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-07 23:42:19.077][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-07 23:42:19.078][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-07 23:42:19.080][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-07 23:42:19.082][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-07 23:42:19.083][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-07 23:42:19.085][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-07 23:42:19.087][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-07 23:42:19.095][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-07 23:42:19.096][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-07 23:42:19.098][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-07 23:42:19.100][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-07 23:42:19.101][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-07 23:42:19.103][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-07 23:42:19.104][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-07 23:42:19.106][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-07 23:42:19.107][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-07 23:42:19.109][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-07 23:42:19.111][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-07 23:42:19.112][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-07 23:42:19.114][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-07 23:42:19.115][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-07 23:42:19.117][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-07 23:42:19.118][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-07 23:42:19.120][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-07 23:42:19.122][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-07 23:42:19.123][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-07 23:42:19.125][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-07 23:42:19.126][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-07 23:42:19.128][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-07 23:42:19.129][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-07 23:42:19.131][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-07 23:42:19.132][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-07 23:42:19.134][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-07 23:42:19.135][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-07 23:42:19.137][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-07 23:42:19.139][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-07 23:42:19.140][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-07 23:42:19.142][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-07 23:42:19.143][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-07 23:42:19.145][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-07 23:42:19.146][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-07 23:42:19.148][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-07 23:42:19.149][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-07 23:42:19.151][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-07 23:42:19.153][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-07 23:42:19.154][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-07 23:42:19.156][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-07 23:42:19.157][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-07 23:42:19.159][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-07 23:42:19.160][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-07 23:42:19.162][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-07 23:42:19.164][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-07 23:42:19.165][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-07 23:42:19.167][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-07 23:42:19.168][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-07 23:42:19.170][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-07 23:42:19.171][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-07 23:42:19.173][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-07 23:42:19.175][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-07 23:42:19.176][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-07 23:42:19.178][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-07 23:42:19.179][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-07 23:42:19.181][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-07 23:42:19.183][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-07 23:42:19.184][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-07 23:42:19.186][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-07 23:42:19.187][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-07 23:42:19.189][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-07 23:42:19.190][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-07 23:42:19.192][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-07 23:42:19.194][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-07 23:42:19.195][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-07 23:42:19.197][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-07 23:42:19.199][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-07 23:42:19.200][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-07 23:42:19.202][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-07 23:42:19.203][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-07 23:42:19.205][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-07 23:42:19.207][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-07 23:42:19.208][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-07 23:42:19.210][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-07 23:42:19.211][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-07 23:42:19.213][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-07 23:42:19.215][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-07 23:42:19.217][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-07 23:42:19.218][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.220][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-07 23:42:19.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-07 23:42:19.357][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-07 23:42:19.359][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-07 23:42:19.361][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:19.362][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-07 23:42:19.363][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:19.364][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-07 23:42:19.366][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:19.367][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-07 23:42:19.368][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:19.369][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-07 23:42:19.371][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-07 23:42:19.372][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-07 23:42:19.373][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:19.374][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-07 23:42:19.375][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-07 23:42:19.377][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-07 23:42:19.378][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-07 23:42:19.379][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-07 23:42:19.379][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-07 23:42:19.379][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-07 23:42:19.381][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-07 23:42:19.382][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:19.383][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:19.384][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-07 23:42:19.385][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-07 23:42:19.386][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-07 23:42:19.388][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-07 23:42:19.389][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-07 23:42:19.389][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-07 23:42:19.390][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-07 23:42:19.391][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-07 23:42:19.392][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-07 23:42:19.394][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-07 23:42:19.394][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-07 23:42:19.395][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-07 23:42:19.397][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-07 23:42:19.399][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-07 23:42:19.400][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-07 23:42:19.402][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-07 23:42:19.404][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-07 23:42:19.407][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-07 23:42:19.409][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-08-07 23:42:19.410][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-08-07 23:42:19.412][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-08-07 23:42:19.414][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-07 23:42:19.415][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-07 23:42:19.417][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-08-07 23:42:19.418][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-07 23:42:19.420][biodb::testThat]
biodb.INFO [2025-08-07 23:42:19.421][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2025-08-07 23:42:19.422][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-07 23:42:19.423][biodb::testThat]
biodb.DEBUG[2025-08-07 23:42:19.427][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-08-07 23:42:19.432][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:19.434][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-08-07 23:42:19.435][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:19.438][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-08-07 23:42:19.442][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-07 23:42:19.445][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-07 23:42:19.447][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-08-07 23:42:19.449][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:19.451][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2025-08-07 23:42:19.456][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2025-08-07 23:42:19.457][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-07 23:42:19.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2025-08-07 23:42:19.460][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-07 23:42:19.482][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2025-08-07 23:42:19.484][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-07 23:42:19.485][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-07 23:42:19.487][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-07 23:42:19.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-07 23:42:19.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-07 23:42:19.514][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:19.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:19.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:19.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:19.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.531][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:19.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:19.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-07 23:42:19.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-07 23:42:19.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.542][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:19.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:19.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-07 23:42:19.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-07 23:42:19.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-07 23:42:19.553][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-07 23:42:19.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-07 23:42:19.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-07 23:42:19.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:19.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:19.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:19.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-07 23:42:19.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.573][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:19.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:19.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.578][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-07 23:42:19.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-07 23:42:19.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.583][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:19.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:19.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:19.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-07 23:42:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.594][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:19.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:19.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-07 23:42:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-07 23:42:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.604][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:19.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:19.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-07 23:42:19.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-07 23:42:19.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.616][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:19.617][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:19.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.619][ef$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-07 23:42:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-07 23:42:19.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:19.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:19.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:19.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:19.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:19.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:19.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-07 23:42:19.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-07 23:42:19.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:19.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:19.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:19.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:19.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:19.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:19.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:19.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:19.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:19.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-07 23:42:19.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-07 23:42:19.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-07 23:42:19.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-07 23:42:19.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-07 23:42:19.678][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2025-08-07 23:42:19.693][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-07 23:42:19.695][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-08-07 23:42:19.697][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-07 23:42:19.698][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-07 23:42:19.699][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-07 23:42:19.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-07 23:42:19.701][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-07 23:42:19.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-07 23:42:19.704][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-07 23:42:19.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 358 ]
>
> proc.time()
user system elapsed
18.70 1.31 25.67
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 3.80 | 2.44 | 281.22 | |
| ChebiEntry | 0.60 | 0.00 | 0.61 | |