Multiple platform build/check report for BioC 3.21 - BUILD results for SVP on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4823
palomino7	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4565
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4603
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4544
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SVP on kjohnson1

To the developers/maintainers of the SVP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SVP

Version: 1.0.2

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SVP

StartedAt: 2025-08-01 09:55:55 -0400 (Fri, 01 Aug 2025)

EndedAt: 2025-08-01 10:01:47 -0400 (Fri, 01 Aug 2025)

EllapsedTime: 351.9 seconds

RetCode: 0

Status: OK

PackageFile: SVP_1.0.2.tar.gz

PackageFileSize: 4.821 MiB

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SVP
###
##############################################################################
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* checking for file ‘SVP/DESCRIPTION’ ... OK
* preparing ‘SVP’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
  NB: this package now depends on R (>= 4.1.0)
  WARNING: Added dependency on R >= 4.1.0 because package code uses the
  pipe |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘LISAResult.Rd’ ‘LISAsce-method.Rd’ ‘SVP-accessors.Rd’
    ‘SVPExperiment.Rd’ ‘as_tbl_df.Rd’ ‘bivar-internal.R’
    ‘cal_lisa_f1-method.Rd’ ‘cluster.assign-method.Rd’ ‘fast_cor.Rd’
    ‘fscoreDfs.Rd’ ‘internals.R’ ‘lisa-internal.R’ ‘methods-accessor.R’
    ‘methods-detect.marker.R’ ‘methods-encode.R’ ‘methods-lisaRes.R’
    ‘methods-mca.R’ ‘methods-plot.R’ ‘plot_heatmap_globalbv.Rd’
    ‘pred.cell.signature-method.Rd’ ‘runCORR-method.Rd’
    ‘runDetectMarker-method.Rd’ ‘runDetectSVG-method.Rd’
    ‘runGLOBALBV-method.Rd’ ‘runKldSVG-method.Rd’ ‘runLISA-method.Rd’
    ‘runLOCALBV-method.Rd’ ‘runMCA-method.Rd’ ‘runSGSA-method.Rd’
    ‘runWKDE-method.Rd’ ‘svDfs.Rd’ ‘svp-internals.R’
* building ‘SVP_1.0.2.tar.gz’