Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-10-02 11:39 -0400 (Thu, 02 Oct 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4831 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4612 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4553 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4584 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1465/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OCplus 1.82.0 (landing page) Alexander Ploner
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the OCplus package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OCplus.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: OCplus |
Version: 1.82.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OCplus.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OCplus_1.82.0.tar.gz |
StartedAt: 2025-09-30 07:23:31 -0400 (Tue, 30 Sep 2025) |
EndedAt: 2025-09-30 07:25:57 -0400 (Tue, 30 Sep 2025) |
EllapsedTime: 145.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OCplus.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OCplus.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OCplus_1.82.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/OCplus.Rcheck’ * using R version 4.5.1 RC (2025-06-05 r88288) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘OCplus/DESCRIPTION’ ... OK * this is package ‘OCplus’ version ‘1.82.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OCplus’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) DrawContourlines.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) DrawContourlines.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) DrawContourlines.Rd:22: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed samplesize 9.565 1.411 11.137 tMixture 4.335 1.157 5.713 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.21-bioc/meat/OCplus.Rcheck/00check.log’ for details.
OCplus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL OCplus ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘OCplus’ ... ** this is package ‘OCplus’ version ‘1.82.0’ ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OCplus)
OCplus.Rcheck/OCplus-Ex.timings
name | user | system | elapsed | |
EOC | 0.533 | 0.190 | 0.738 | |
FDR | 0.003 | 0.001 | 0.005 | |
MAsim.smyth | 1.674 | 0.163 | 1.855 | |
OCshow | 1.589 | 0.272 | 1.881 | |
TOC | 0.408 | 0.105 | 0.515 | |
average.fdr | 1.530 | 0.210 | 1.766 | |
fdr1d | 1.070 | 0.149 | 1.239 | |
fdr2d | 0.964 | 0.133 | 1.107 | |
plot.FDR.result | 1.413 | 0.140 | 1.566 | |
plot.fdr1d.result | 1.168 | 0.125 | 1.305 | |
plot.fdr2d.result | 1.433 | 0.142 | 1.587 | |
samplesize | 9.565 | 1.411 | 11.137 | |
smooth1d | 0.062 | 0.023 | 0.085 | |
summary.fdr.result | 0.654 | 0.073 | 0.730 | |
tMixture | 4.335 | 1.157 | 5.713 | |