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This page was generated on 2025-08-04 11:40 -0400 (Mon, 04 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4823
palomino7Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4565
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4603
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4544
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4579
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1213/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MEIGOR 1.42.0  (landing page)
Jose A. Egea
Snapshot Date: 2025-07-31 13:40 -0400 (Thu, 31 Jul 2025)
git_url: https://git.bioconductor.org/packages/MEIGOR
git_branch: RELEASE_3_21
git_last_commit: 8926aac
git_last_commit_date: 2025-04-15 13:30:04 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


BUILD results for MEIGOR on nebbiolo1

To the developers/maintainers of the MEIGOR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MEIGOR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MEIGOR
Version: 1.42.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MEIGOR
StartedAt: 2025-08-03 17:59:19 -0400 (Sun, 03 Aug 2025)
EndedAt: 2025-08-03 17:59:33 -0400 (Sun, 03 Aug 2025)
EllapsedTime: 14.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MEIGOR
###
##############################################################################
##############################################################################


* checking for file ‘MEIGOR/DESCRIPTION’ ... OK
* preparing ‘MEIGOR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MEIGOR-vignette.Rmd’ using rmarkdown

Quitting from MEIGOR-vignette.Rmd:438-453 [ex2Solve3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `while (go <= 0) {
    cz = try(chol(hessv + lambda * diag(as.numeric(dx * dx), length(dx), length(
      dx))), silent = TRUE)
    if (inherits(cz, "try-error")) {
      p = p * vscale[(neq + 2):(nc + np + 1)]
      if (nc > 0) {
        y = 0
      }
      hessv = vscale[1] * hessv / (vscale[(neq + 2):(nc + np + 1)] %*% t(vscale[
        (neq + 2):(nc + np + 1)]))
      ans = list(p = p, y = y, hessv = hessv, lambda = lambda)
      assign(".solnp_errors", 1, envir = .env)
      return(ans)
    }
    cz = try(solve(cz), silent = TRUE)
    if (inherits(cz, "try-error")) {
      p = p * vscale[(neq + 2):(nc + np + 1)]
      if (nc > 0) {
        y = 0
      }
      hessv = vscale[1] * hessv / (vscale[(neq + 2):(nc + np + 1)] %*% t(vscale[
        (neq + 2):(nc + np + 1)]))
      ans = list(p = p, y = y, hessv = hessv, lambda = lambda)
      assign(".solnp_errors", 1, envir = .env)
      return(ans)
    }
    yg = t(cz) %*% g
    if (nc == 0) {
      u = -cz %*% yg
    } else {
      y = try(qr.solve(t(cz) %*% t(a), yg), silent = TRUE)
      if (inherits(y, "try-error")) {
        p = p * vscale[(neq + 2):(nc + np + 1)]
        if (nc > 0) {
          y = 0
        }
        hessv = vscale[1] * hessv / (vscale[(neq + 2):(nc + np + 1)] %*% t(vscale[
          (neq + 2):(nc + np + 1)]))
        ans = list(p = p, y = y, hessv = hessv, lambda = lambda)
        assign(".solnp_errors", 1, envir = .env)
        return(ans)
      }
      u = -cz %*% (yg - (t(cz) %*% t(a)) %*% y)
    }
    p0 = u[1:npic] + p
    if (!ind[11]) {
      go = 1
    } else {
      go = min(c(p0[1:mm] - pb[, 1], pb[, 2] - p0[1:mm]))
      lambda = 3 * lambda
    }
  }`:
! missing value where TRUE/FALSE needed
---
Backtrace:
    ▆
 1. └─MEIGOR::MEIGO(problem, opts, algorithm = "ESS", k1, k2, k3, k4)
 2.   └─MEIGOR::essR(problem, opts, ...)
 3.     └─MEIGOR:::ssm_localsolver(...)
 4.       └─Rsolnp::solnp(...)
 5.         └─Rsolnp:::.subnp(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MEIGOR-vignette.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘MEIGOR-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘MEIGOR-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted