Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-08-04 11:40 -0400 (Mon, 04 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4823 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4565 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4603 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4544 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1213/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MEIGOR 1.42.0 (landing page) Jose A. Egea
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the MEIGOR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MEIGOR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MEIGOR |
Version: 1.42.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MEIGOR |
StartedAt: 2025-08-03 17:59:19 -0400 (Sun, 03 Aug 2025) |
EndedAt: 2025-08-03 17:59:33 -0400 (Sun, 03 Aug 2025) |
EllapsedTime: 14.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MEIGOR ### ############################################################################## ############################################################################## * checking for file ‘MEIGOR/DESCRIPTION’ ... OK * preparing ‘MEIGOR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MEIGOR-vignette.Rmd’ using rmarkdown Quitting from MEIGOR-vignette.Rmd:438-453 [ex2Solve3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `while (go <= 0) { cz = try(chol(hessv + lambda * diag(as.numeric(dx * dx), length(dx), length( dx))), silent = TRUE) if (inherits(cz, "try-error")) { p = p * vscale[(neq + 2):(nc + np + 1)] if (nc > 0) { y = 0 } hessv = vscale[1] * hessv / (vscale[(neq + 2):(nc + np + 1)] %*% t(vscale[ (neq + 2):(nc + np + 1)])) ans = list(p = p, y = y, hessv = hessv, lambda = lambda) assign(".solnp_errors", 1, envir = .env) return(ans) } cz = try(solve(cz), silent = TRUE) if (inherits(cz, "try-error")) { p = p * vscale[(neq + 2):(nc + np + 1)] if (nc > 0) { y = 0 } hessv = vscale[1] * hessv / (vscale[(neq + 2):(nc + np + 1)] %*% t(vscale[ (neq + 2):(nc + np + 1)])) ans = list(p = p, y = y, hessv = hessv, lambda = lambda) assign(".solnp_errors", 1, envir = .env) return(ans) } yg = t(cz) %*% g if (nc == 0) { u = -cz %*% yg } else { y = try(qr.solve(t(cz) %*% t(a), yg), silent = TRUE) if (inherits(y, "try-error")) { p = p * vscale[(neq + 2):(nc + np + 1)] if (nc > 0) { y = 0 } hessv = vscale[1] * hessv / (vscale[(neq + 2):(nc + np + 1)] %*% t(vscale[ (neq + 2):(nc + np + 1)])) ans = list(p = p, y = y, hessv = hessv, lambda = lambda) assign(".solnp_errors", 1, envir = .env) return(ans) } u = -cz %*% (yg - (t(cz) %*% t(a)) %*% y) } p0 = u[1:npic] + p if (!ind[11]) { go = 1 } else { go = min(c(p0[1:mm] - pb[, 1], pb[, 2] - p0[1:mm])) lambda = 3 * lambda } }`: ! missing value where TRUE/FALSE needed --- Backtrace: ▆ 1. └─MEIGOR::MEIGO(problem, opts, algorithm = "ESS", k1, k2, k3, k4) 2. └─MEIGOR::essR(problem, opts, ...) 3. └─MEIGOR:::ssm_localsolver(...) 4. └─Rsolnp::solnp(...) 5. └─Rsolnp:::.subnp(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MEIGOR-vignette.Rmd' failed with diagnostics: missing value where TRUE/FALSE needed --- failed re-building ‘MEIGOR-vignette.Rmd’ SUMMARY: processing the following file failed: ‘MEIGOR-vignette.Rmd’ Error: Vignette re-building failed. Execution halted