Multiple platform build/check report for BioC 3.21 - BUILD results for HEM on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4833
merida1	macOS 12.7.6 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4614
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4555
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4586
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for HEM on kjohnson1

To the developers/maintainers of the HEM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HEM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: HEM

Version: 1.80.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HEM

StartedAt: 2025-10-14 02:08:37 -0400 (Tue, 14 Oct 2025)

EndedAt: 2025-10-14 02:08:39 -0400 (Tue, 14 Oct 2025)

EllapsedTime: 2.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HEM
###
##############################################################################
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* checking for file ‘HEM/DESCRIPTION’ ... OK
* preparing ‘HEM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘HEM’ ...
** this is package ‘HEM’ version ‘1.80.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c hem.c -o hem.o
In file included from hem.c:17:
./random4f.h:126:18: error: unknown type name 'alpha'
double gammadist(alpha)
                 ^
./random4f.h:126:24: error: expected ';' after top level declarator
double gammadist(alpha)
                       ^
                       ;
./random4f.h:128:1: error: expected identifier or '('
{ double u0,x,y;
^
hem.c:980:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable]
        double temp, temp2, MHratio, U, old, new, raccept;
                                                  ^
hem.c:1079:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable]
        double temp, temp2, MHratio, U, old, new, raccept;
                                                  ^
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
        int i, j, k, m, n;
                  ^
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
  int i, j, k, l;
               ^
4 warnings and 3 errors generated.
make: *** [hem.o] Error 1
ERROR: compilation failed for package ‘HEM’
* removing ‘/private/tmp/RtmpvKEdsU/Rinst117802be1c887/HEM’
      -----------------------------------
ERROR: package installation failed