Manuela Hummel
| Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/GlobalAncova |
| git_branch: RELEASE_3_21 |
| git_last_commit: f45da39 |
| git_last_commit_date: 2025-04-15 09:37:10 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-10-16 11:41 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4614 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4555 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 888/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GlobalAncova 4.26.0 (landing page) Manuela Hummel
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the GlobalAncova package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GlobalAncova.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: GlobalAncova |
| Version: 4.26.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL GlobalAncova |
| StartedAt: 2025-10-13 20:44:36 -0000 (Mon, 13 Oct 2025) |
| EndedAt: 2025-10-13 20:45:11 -0000 (Mon, 13 Oct 2025) |
| EllapsedTime: 34.9 seconds |
| RetCode: 0 |
| Status: OK |
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD INSTALL GlobalAncova
###
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* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘GlobalAncova’ ...
** this is package ‘GlobalAncova’ version ‘4.26.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function ‘row_orth2d’:
GlobalAncova.c:33:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
33 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
34 | (*sD)*(*sD)*sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:38:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
38 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
39 | (*sD)*(*sD)*sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:43:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
43 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
44 | (*zD)*(*sD)*sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:48:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
48 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
49 | (*zD)*(*zD)*sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c: In function ‘genewiseGA’:
GlobalAncova.c:88:54: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
88 | { error("Warning in genewiseGA: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
89 | (*zxx)*(*zD_full) * sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:100:56: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
100 | { error("Warning in genewiseGA: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
101 | (*zxx)*(*zD_red) * sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c: In function ‘permut_withFperm’:
GlobalAncova.c:148:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
148 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
149 | (*zrr) * sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:153:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
153 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
154 | (*zrr) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:158:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
158 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
159 | (*n_test_genes) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:163:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
163 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
164 | (*sD_full)*(*sD_full) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:170:50: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
170 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
171 | (*N_Subjects) * sizeof(int));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c: In function ‘permut’:
GlobalAncova.c:250:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
250 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
251 | (*zrr) * sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:255:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
255 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
256 | (*zrr) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:260:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
260 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
261 | (*n_test_genes) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:265:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
265 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
266 | (*sD_full)*(*sD_full) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c:272:50: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
272 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %ld
273 | (*N_Subjects) * sizeof(int));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
GlobalAncova.c: In function ‘permut_withFperm’:
GlobalAncova.c:177:8: warning: ‘ord_perm’ may be used uninitialized [-Wmaybe-uninitialized]
177 | sample ( ord_perm , N_Subjects ) ;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:166:8: note: ‘ord_perm’ was declared here
166 | int *ord_perm ;
| ^~~~~~~~
GlobalAncova.c: In function ‘permut’:
GlobalAncova.c:280:8: warning: ‘ord_perm’ may be used uninitialized [-Wmaybe-uninitialized]
280 | sample ( ord_perm , N_Subjects ) ;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:268:8: note: ‘ord_perm’ was declared here
268 | int *ord_perm ;
| ^~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c ludcmp.c -o ludcmp.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c matrix.c -o matrix.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o GlobalAncova.so GlobalAncova.o ludcmp.o matrix.o -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-GlobalAncova/00new/GlobalAncova/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GlobalAncova)