Multiple platform build/check report for BioC 3.21 - BUILD results for DeconvoBuddies on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4823
palomino7	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4565
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4603
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4544
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for DeconvoBuddies on nebbiolo1

To the developers/maintainers of the DeconvoBuddies package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeconvoBuddies.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DeconvoBuddies

Version: 1.0.1

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DeconvoBuddies

StartedAt: 2025-08-03 16:55:54 -0400 (Sun, 03 Aug 2025)

EndedAt: 2025-08-03 17:02:48 -0400 (Sun, 03 Aug 2025)

EllapsedTime: 414.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DeconvoBuddies
###
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* checking for file ‘DeconvoBuddies/DESCRIPTION’ ... OK
* preparing ‘DeconvoBuddies’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DeconvoBuddies.Rmd’ using rmarkdown

Quitting from DeconvoBuddies.Rmd:34-79 [vignetteSetup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `citation()`:
! there is no package called 'BisqueRNA'
---
Backtrace:
    ▆
 1. └─utils::citation("BisqueRNA")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DeconvoBuddies.Rmd' failed with diagnostics:
there is no package called 'BisqueRNA'
--- failed re-building ‘DeconvoBuddies.Rmd’

--- re-building ‘Deconvolution_Benchmark_DLPFC.Rmd’ using rmarkdown

Quitting from Deconvolution_Benchmark_DLPFC.Rmd:135-155 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'BisqueRNA'
---
Backtrace:
    ▆
 1. └─base::library("BisqueRNA")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Deconvolution_Benchmark_DLPFC.Rmd' failed with diagnostics:
there is no package called 'BisqueRNA'
--- failed re-building ‘Deconvolution_Benchmark_DLPFC.Rmd’

--- re-building ‘Marker_Finding.Rmd’ using rmarkdown
--- finished re-building ‘Marker_Finding.Rmd’

SUMMARY: processing the following files failed:
  ‘DeconvoBuddies.Rmd’ ‘Deconvolution_Benchmark_DLPFC.Rmd’

Error: Vignette re-building failed.
Execution halted