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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CBN2Path
###
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* checking for file ‘CBN2Path/DESCRIPTION’ ... OK
* preparing ‘CBN2Path’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CBN2Path.Rmd’ using rmarkdown
/usr/bin/gtar: MANIFEST.txt: time stamp 2025-12-19 00:28:00.43149 is 60.05157045 s in the future
/usr/bin/gtar: 00187151-a31d-4bc9-a86b-a4a4c9ecd596/337bfa14-5549-44fd-96c2-ae1c733f8b55.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.446797 is 60.06663498 s in the future
/usr/bin/gtar: 02e52025-7568-4d84-9f1d-9a156e67d709/fb310fee-c9c0-4254-9bea-040e2e675af6.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.45038 is 60.0700227 s in the future
/usr/bin/gtar: 03874f9f-96f2-409d-b1d2-308a52fb0a51/7b05a746-8276-4955-ac74-20f47b3309e5.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.4557552 is 60.07505895 s in the future
/usr/bin/gtar: 0391c980-ddd7-4a2c-a62c-ed8d13a014ef/7a9ca8da-23f4-423d-854e-2598b0b5593a.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.4609854 is 60.08009328 s in the future
/usr/bin/gtar: 03d908dc-2722-438f-a3ad-b0516c4c5b35/5b504e29-ffa8-45bc-8360-03f37323328a.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.4651384 is 60.08396651 s in the future
/usr/bin/gtar: 049a4abd-df4b-4e38-ae55-3592c35a0e95/edc8c641-db79-4ff9-a287-23a699f3fddd.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.4693267 is 60.08793763 s in the future
/usr/bin/gtar: 049b32ae-f4ab-4684-a92d-1cccb7e82520/fb115211-a3c5-4bb9-a014-996c45c30b14.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.4734035 is 60.09153842 s in the future
/usr/bin/gtar: 04b9912b-99f9-4402-9a67-05faca5a7d9a/94c2cb29-2ffe-4d98-be9b-6769b1e49814.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.4826415 is 60.09935842 s in the future
/usr/bin/gtar: 0540045b-0d3c-4b0a-aded-d44207291610/5a7a5ad1-3624-418c-857f-5a7239288ed3.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.5125864 is 60.1286201 s in the future
/usr/bin/gtar: 05e6d4e9-f644-46ae-9e08-55f8f23c9e64/a68a5fca-43a1-43b8-9240-83248fcaa834.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.524016 is 60.13992446 s in the future
/usr/bin/gtar: 085aec79-f448-4278-a8a1-d6f68a324615/7c6216cb-15a0-4278-884c-3a5ff67dfc89.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.5270514 is 60.14244614 s in the future
/usr/bin/gtar: 08fa9483-7112-405f-8675-37fd896af800/06fe60be-3ead-45c3-be29-3f4a243ddc8a.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.5318735 is 60.14703001 s in the future
/usr/bin/gtar: 0939c8ed-132a-4c80-af0d-51993bd88f16/b6103c0a-2e2e-4613-99e0-f492a3e1faa9.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.535212 is 60.15020016 s in the future
/usr/bin/gtar: 095320d2-1002-4686-a175-26b6a035fd4d/68829af9-3c54-47e4-acb0-7716169823f1.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.5387692 is 60.15350417 s in the future
/usr/bin/gtar: 09f10f0f-f7b6-4af0-b758-766a86411a4b/8a6ddc84-6fef-45e9-aff9-da0676f69d65.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:00.5443697 is 60.15885624 s in the future
/usr/bin/gtar: 09f4e79a-6462-457e-bab3-47925b52a452/a6817635-66d0-4505-ac55-e358234c7085.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:31.0327356 is 90.64693865 s in the future
/usr/bin/gtar: 0a1d0c07-db23-4014-a627-91ae4c6564ff/8b9add6c-2113-4418-85c2-e084479661f0.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:31.0389469 is 90.65282323 s in the future
/usr/bin/gtar: 0b24156d-3c68-42b2-a596-d759e10b173d/83ea1c9e-e71d-4366-aef1-4f4d1e79c21d.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:31.0442114 is 90.65792411 s in the future
/usr/bin/gtar: 0b2ca9fd-e470-4aa4-8661-33e9e3b592c8/8fe1aeec-25ea-4f4d-a878-99ea754c4fd1.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:28:31.0482478 is 90.66155361 s in the future
/usr/bin/gtar: 0c4900ca-f288-4603-8278-27c65ccdf480/131960c9-2b20-4c9f-8c70-cbcf7625988b.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:32.1269333 is 331.74009262 s in the future
/usr/bin/gtar: 0cba441f-d42f-4d66-b647-3d9abbe2bc1f/3126596b-11e8-42bb-9c0f-e1d67208eadd.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:32.155746 is 331.76873969 s in the future
/usr/bin/gtar: 0cfdf510-822d-4966-9567-5afea90d1607/4d9ab77a-85d5-4487-8c1e-c0dfc7860271.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:32.1590695 is 331.77185402 s in the future
/usr/bin/gtar: 0d84bf9f-6214-4aba-bd19-467fd4725af4/ae4dd93e-49f1-4004-9b3f-6a5863934de7.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:32.1635404 is 331.7761712 s in the future
/usr/bin/gtar: 0e3d3f77-3814-48c3-b7cd-7c34531a450d/f4b5b1e4-64e6-42ef-83e7-9440f51bec42.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:32.1675847 is 331.77986452 s in the future
/usr/bin/gtar: 0f40bc04-4c4c-42fd-a6ff-e239b3a90b7a/9792720d-fae3-495f-910c-1370ff61e908.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:32.1759155 is 331.78787992 s in the future
/usr/bin/gtar: 0fc8b64a-738b-42a6-a9aa-93ce4e3b597a/ce6d3b36-d5e2-45d7-8f1f-64c7e5886c4b.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:32.1821916 is 331.79402504 s in the future
/usr/bin/gtar: 10590dd2-f195-4618-8652-2e7dfd536271/d69088be-0732-48b6-9b81-6c67ae665c35.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:34.1684577 is 333.77991327 s in the future
/usr/bin/gtar: 10e820d6-5ae7-46a6-9372-37ed2e4a260e/2c3f33fd-2cf2-44ed-b05f-40f36e122296.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:34.1827524 is 333.79407101 s in the future
/usr/bin/gtar: 10f5e544-ec52-4da7-8619-c32dba2bd990/7299cc14-f144-41c4-b87d-f1afe86213bd.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:34.188302 is 333.7994757 s in the future
/usr/bin/gtar: 1161c30f-537e-4f2d-9ec2-95ea7b88859d/eca48f9e-17b2-43a4-992e-ed3488ff55d4.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:34.1922238 is 333.80325306 s in the future
/usr/bin/gtar: 11e48e04-7f2e-44cf-9181-802e52378f5d/33bf2dd8-5c21-412f-a4b8-3faa55c036c7.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:34.1954162 is 333.80621429 s in the future
/usr/bin/gtar: 128cb565-1283-4a99-8302-dbc8dc40f788/73eb8cb9-5c51-4ffe-9be3-f181c94d0e56.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:35.993402 is 335.60405034 s in the future
/usr/bin/gtar: 12dd4299-8a57-4807-82d1-0b0c099aeb8f/b8d78838-650d-4db9-9567-5b4ece3669d7.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:35.9967113 is 335.60662953 s in the future
/usr/bin/gtar: 137a5cd0-6953-4eae-988a-0ebb6ff84b5a/09bce571-5759-4248-a6c2-01d6b940fb1d.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:36.008857 is 335.61846612 s in the future
/usr/bin/gtar: 14e21029-e9cc-46be-a4eb-2b23db1f0f26/07a6647b-c003-4f60-a54d-f1da21c9d609.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:36.0116444 is 335.62109669 s in the future
/usr/bin/gtar: 151e424f-6e31-4413-a50f-709ccba12d1a/febc948a-20af-4929-8c55-8fd8afca5fc4.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:36.0132983 is 335.62227728 s in the future
/usr/bin/gtar: 153791ec-36af-488d-9e7a-43b74133c8cf/de1b0f6a-8a93-4cb9-a0bf-2b62efe7d279.wxs.aliquot_ensemble_masked.maf.gz: time stamp 2025-12-19 00:32:38.343617 is 337.95133955 s in the future

gzip: stdin: unexpected end of file
/usr/bin/gtar: Unexpected EOF in archive
/usr/bin/gtar: Unexpected EOF in archive
/usr/bin/gtar: Error is not recoverable: exiting now

Quitting from CBN2Path.Rmd:54-64 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `GDCprepare()`:
! I couldn't find all the files from the query. Please check if the directory parameter is right or `GDCdownload` downloaded the samples.
---
Backtrace:
    ▆
 1. └─CBN2Path::getRawTCGAData("TCGA-BLCA")
 2.   └─TCGAbiolinks::GDCprepare(query)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CBN2Path.Rmd' failed with diagnostics:
I couldn't find all the files from the query. Please check if the directory parameter is right or `GDCdownload` downloaded the samples.
--- failed re-building ‘CBN2Path.Rmd’

SUMMARY: processing the following file failed:
  ‘CBN2Path.Rmd’

Error: Vignette re-building failed.
Execution halted