Back to Build/check report for BioC 3.22 experimental data |
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This page was generated on 2025-07-15 15:41 -0400 (Tue, 15 Jul 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4785 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 192/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
homosapienDEE2CellScore 1.5.0 (landing page) Justin Marsh
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the homosapienDEE2CellScore package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: homosapienDEE2CellScore |
Version: 1.5.0 |
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:homosapienDEE2CellScore.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings homosapienDEE2CellScore_1.5.0.tar.gz |
StartedAt: 2025-07-15 12:29:03 -0400 (Tue, 15 Jul 2025) |
EndedAt: 2025-07-15 12:46:32 -0400 (Tue, 15 Jul 2025) |
EllapsedTime: 1049.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: homosapienDEE2CellScore.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:homosapienDEE2CellScore.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings homosapienDEE2CellScore_1.5.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/homosapienDEE2CellScore.Rcheck’ * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.2 LTS * using session charset: UTF-8 * checking for file ‘homosapienDEE2CellScore/DESCRIPTION’ ... OK * this is package ‘homosapienDEE2CellScore’ version ‘1.5.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘homosapienDEE2CellScore’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed buildData 18.933 1.892 260.856 writeOutSEZip 9.105 0.578 199.945 buildRaw 6.340 0.834 208.766 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
homosapienDEE2CellScore.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL homosapienDEE2CellScore ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘homosapienDEE2CellScore’ ... ** this is package ‘homosapienDEE2CellScore’ version ‘1.5.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (homosapienDEE2CellScore)
homosapienDEE2CellScore.Rcheck/homosapienDEE2CellScore-Ex.timings
name | user | system | elapsed | |
HomosapienDEE2_QC_WARN_Raw | 0.596 | 0.041 | 0.822 | |
buildData | 18.933 | 1.892 | 260.856 | |
buildRaw | 6.340 | 0.834 | 208.766 | |
cols | 0.002 | 0.000 | 0.002 | |
downloadAllTheData | 0 | 0 | 0 | |
readInSEFolder | 0.045 | 0.000 | 0.046 | |
readInSEZip | 0.044 | 0.001 | 0.046 | |
srx_agg_se | 1.803 | 0.048 | 1.852 | |
writeOutSEZip | 9.105 | 0.578 | 199.945 | |