| Back to Rapid builds (Linux only) of a subset of BioC 3.22 Report updated every 6 hours |
This page was generated on 2025-06-17 22:14 -0400 (Tue, 17 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 886 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 206/221 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| TCGAbiolinks 2.37.0 (landing page) Tiago Chedraoui Silva
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | ERROR | |||||||
|
To the developers/maintainers of the TCGAbiolinks package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: TCGAbiolinks |
| Version: 2.37.0 |
| Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD check --install=check:TCGAbiolinks.install-out.txt --library=/home/rapidbuild/bbs-3.22-bioc-rapid/R/site-library --timings TCGAbiolinks_2.37.0.tar.gz |
| StartedAt: 2025-06-17 21:56:47 -0400 (Tue, 17 Jun 2025) |
| EndedAt: 2025-06-17 21:56:56 -0400 (Tue, 17 Jun 2025) |
| EllapsedTime: 9.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: TCGAbiolinks.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD check --install=check:TCGAbiolinks.install-out.txt --library=/home/rapidbuild/bbs-3.22-bioc-rapid/R/site-library --timings TCGAbiolinks_2.37.0.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/TCGAbiolinks.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘TCGAbiolinks/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TCGAbiolinks’ version ‘2.37.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘supraHex’
Imports includes 23 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
See
‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/TCGAbiolinks.Rcheck/00check.log’
for details.