Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	912
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BUILD results for openCyto on teran2

To the developers/maintainers of the openCyto package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: openCyto

Version: 2.21.0

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data openCyto

StartedAt: 2025-07-19 07:12:39 -0400 (Sat, 19 Jul 2025)

EndedAt: 2025-07-19 07:13:09 -0400 (Sat, 19 Jul 2025)

EllapsedTime: 29.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data openCyto
###
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* checking for file ‘openCyto/DESCRIPTION’ ... OK
* preparing ‘openCyto’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowToAutoGating.Rmd’ using rmarkdown

Quitting from HowToAutoGating.Rmd:43-49 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
     ▆
  1. ├─ggplot2::autoplot(fr, chnl)
  2. └─ggcyto:::autoplot.flowFrame(fr, chnl)
  3.   ├─ggplot2::autoplot(object, x = x, ...)
  4.   └─ggcyto:::autoplot.flowSet(object, x = x, ...)
  5.     ├─ggcyto::ggcyto(object, aes_q(x = as.symbol(x)), ...)
  6.     └─ggcyto:::ggcyto.flowSet(object, aes_q(x = as.symbol(x)), ...)
  7.       ├─p + ggcyto_par_default()
  8.       └─p + ggcyto_par_default()
  9.         └─ggcyto:::add_ggcyto(e1, e2, e2name)
 10.           ├─e1 + e2.new
 11.           └─e1 + e2.new
 12.             └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HowToAutoGating.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘HowToAutoGating.Rmd’

--- re-building ‘HowToWriteCSVTemplate.Rmd’ using rmarkdown
--- finished re-building ‘HowToWriteCSVTemplate.Rmd’

--- re-building ‘openCytoVignette.Rmd’ using knitr

Quitting from openCytoVignette.Rmd:68-71 [plot-manual-gates]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
     ▆
  1. ├─ggplot2::autoplot(gh)
  2. └─ggcyto:::autoplot.GatingHierarchy(gh)
  3.   ├─BiocGenerics::lapply(...)
  4.   └─base::lapply(...)
  5.     └─ggcyto (local) FUN(X[[i]], ...)
  6.       └─ggcyto:::autoplot.GatingSet(object, gate, y = y, ...)
  7.         ├─ggcyto::ggcyto(object, mapping, ...)
  8.         └─ggcyto:::ggcyto.GatingHierarchy(object, mapping, ...)
  9.           ├─ggcyto::ggcyto(data, ...)
 10.           └─ggcyto:::ggcyto.GatingSet(data, ...)
 11.             └─ggcyto:::ggcyto.flowSet(data = data, mapping = mapping, ...)
 12.               ├─p + ggcyto_par_default()
 13.               └─p + ggcyto_par_default()
 14.                 └─ggcyto:::add_ggcyto(e1, e2, e2name)
 15.                   ├─e1 + e2.new
 16.                   └─e1 + e2.new
 17.                     └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'openCytoVignette.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘openCytoVignette.Rmd’

SUMMARY: processing the following files failed:
  ‘HowToAutoGating.Rmd’ ‘openCytoVignette.Rmd’

Error: Vignette re-building failed.
Execution halted