Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	912
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BUILD results for ggtreeExtra on teran2

To the developers/maintainers of the ggtreeExtra package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ggtreeExtra

Version: 1.19.0

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggtreeExtra

StartedAt: 2025-06-25 07:02:10 -0400 (Wed, 25 Jun 2025)

EndedAt: 2025-06-25 07:02:24 -0400 (Wed, 25 Jun 2025)

EllapsedTime: 13.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggtreeExtra
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* checking for file ‘ggtreeExtra/DESCRIPTION’ ... OK
* preparing ‘ggtreeExtra’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ggtreeExtra.Rmd’ using rmarkdown

Quitting from ggtreeExtra.Rmd:83-247 [singlelayer]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `is.waive()`:
! could not find function "is.waive"
---
Backtrace:
    ▆
 1. └─ggstar::scale_starshape_manual(...)
 2.   └─ggplot2:::manual_scale("starshape", values, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggtreeExtra.Rmd' failed with diagnostics:
could not find function "is.waive"
--- failed re-building ‘ggtreeExtra.Rmd’

SUMMARY: processing the following file failed:
  ‘ggtreeExtra.Rmd’

Error: Vignette re-building failed.
Execution halted