| Back to Long Tests report for BioC 3.22 |
This page was generated on 2025-06-14 23:55 -0400 (Sat, 14 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4807 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" | 4548 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 14/29 | Hostname | OS / Arch | CHECK | |||||||
| crisprScore 1.13.0 (landing page) Jean-Philippe Fortin
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | ERROR | |||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | NA | ||||||||
|
To the developers/maintainers of the crisprScore package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: crisprScore |
| Version: 1.13.0 |
| Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no crisprScore_1.13.0.tar.gz |
| StartedAt: 2025-06-14 16:04:28 -0400 (Sat, 14 Jun 2025) |
| EndedAt: 2025-06-14 16:04:46 -0400 (Sat, 14 Jun 2025) |
| EllapsedTime: 18.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: crisprScore.Rcheck |
| Warnings: NA |
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### Running command:
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### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no crisprScore_1.13.0.tar.gz
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* using log directory 'F:/biocbuild/bbs-3.22-bioc-longtests/meat/crisprScore.Rcheck'
* using R version 4.5.0 (2025-04-11 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'crisprScore/DESCRIPTION' ... OK
* this is package 'crisprScore' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.data-00000-of-00001
crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.index
crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.meta
Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'crisprScore' can be installed ... ERROR
Installation failed.
See 'F:/biocbuild/bbs-3.22-bioc-longtests/meat/crisprScore.Rcheck/00install.out' for details.
* DONE
Status: 1 ERROR, 1 NOTE
See
'F:/biocbuild/bbs-3.22-bioc-longtests/meat/crisprScore.Rcheck/00check.log'
for details.
crisprScore.Rcheck/00install.out
* installing *source* package 'crisprScore' ... ** this is package 'crisprScore' version '1.13.0' ** using non-staged installation via StagedInstall field ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error: object 'activateEnvironment' is not exported by 'namespace:basilisk.utils' Execution halted ERROR: lazy loading failed for package 'crisprScore' * removing 'F:/biocbuild/bbs-3.22-bioc-longtests/meat/crisprScore.Rcheck/crisprScore'