Back to Long Tests report for BioC 3.22

This page was generated on 2025-06-14 23:55 -0400 (Sat, 14 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4807
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4548
lconwaymacOS 12.7.1 Montereyx86_644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/29HostnameOS / ArchCHECK
biodbHmdb 1.15.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-06-14 09:55 -0400 (Sat, 14 Jun 2025)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: devel
git_last_commit: 9920d92
git_last_commit_date: 2025-04-15 12:42:50 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  ERROR  
palomino8Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  NA  

CHECK results for biodbHmdb on palomino8

To the developers/maintainers of the biodbHmdb package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.15.0
Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbHmdb_1.15.0.tar.gz
StartedAt: 2025-06-14 16:02:44 -0400 (Sat, 14 Jun 2025)
EndedAt: 2025-06-14 16:04:24 -0400 (Sat, 14 Jun 2025)
EllapsedTime: 100.1 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbHmdb.Rcheck
Warnings: NA

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout.fail


R version 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-06-14 16:04:20.058][biodb::testContext]
biodb.INFO [2025-06-14 16:04:20.061][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-14 16:04:20.062][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-06-14 16:04:20.063][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-14 16:04:20.065][biodb::testContext]
biodb.INFO [2025-06-14 16:04:20.071][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-06-14 16:04:20.073][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-06-14 16:04:20.080][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-14 16:04:20.082][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-14 16:04:20.083][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-14 16:04:20.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.087][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-14 16:04:20.103][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-14 16:04:20.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.108][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-14 16:04:20.109][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-14 16:04:20.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.113][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-14 16:04:20.114][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-14 16:04:20.115][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-14 16:04:20.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.120][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-14 16:04:20.121][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-14 16:04:20.122][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-14 16:04:20.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.127][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-14 16:04:20.128][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-14 16:04:20.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.132][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-14 16:04:20.133][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-14 16:04:20.135][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-14 16:04:20.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.139][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-14 16:04:20.140][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-14 16:04:20.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.145][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-14 16:04:20.146][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-14 16:04:20.147][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-14 16:04:20.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.151][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-14 16:04:20.153][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-14 16:04:20.154][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-14 16:04:20.155][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-14 16:04:20.156][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-14 16:04:20.157][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-14 16:04:20.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.162][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-14 16:04:20.163][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-14 16:04:20.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.167][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-14 16:04:20.169][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-14 16:04:20.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.173][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-14 16:04:20.174][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-14 16:04:20.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.179][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-14 16:04:20.180][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-14 16:04:20.187][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-14 16:04:20.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.191][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-14 16:04:20.192][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-14 16:04:20.196][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-14 16:04:20.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.200][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-14 16:04:20.201][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-14 16:04:20.202][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-14 16:04:20.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.209][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-14 16:04:20.236][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.249][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-14 16:04:20.251][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.252][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-14 16:04:20.253][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.254][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.256][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.257][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.258][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-14 16:04:20.259][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-14 16:04:20.260][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.262][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-14 16:04:20.263][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-14 16:04:20.264][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.265][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.266][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-14 16:04:20.266][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-14 16:04:20.266][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-14 16:04:20.266][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-14 16:04:20.266][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-14 16:04:20.267][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-14 16:04:20.269][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-14 16:04:20.270][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-14 16:04:20.271][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-14 16:04:20.272][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-14 16:04:20.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-14 16:04:20.274][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.275][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.277][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-14 16:04:20.278][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-14 16:04:20.279][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.280][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.281][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-14 16:04:20.283][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.284][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-14 16:04:20.286][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.287][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-14 16:04:20.288][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.289][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.290][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.291][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.293][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-14 16:04:20.294][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-14 16:04:20.295][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.296][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-14 16:04:20.297][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-14 16:04:20.299][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.300][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.301][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-14 16:04:20.301][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-14 16:04:20.301][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-14 16:04:20.301][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-14 16:04:20.301][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-14 16:04:20.302][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-14 16:04:20.303][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-14 16:04:20.304][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-14 16:04:20.305][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-14 16:04:20.307][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-14 16:04:20.308][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-14 16:04:20.309][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.310][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.311][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-14 16:04:20.312][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-14 16:04:20.313][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.315][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.316][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-14 16:04:20.318][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.319][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-14 16:04:20.320][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.321][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-14 16:04:20.323][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.324][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.325][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.326][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.327][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-14 16:04:20.328][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-14 16:04:20.330][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.331][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-14 16:04:20.332][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-14 16:04:20.333][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.334][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.335][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.337][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-14 16:04:20.338][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-14 16:04:20.339][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-14 16:04:20.340][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-14 16:04:20.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-14 16:04:20.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-14 16:04:20.343][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.345][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.346][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-14 16:04:20.347][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-14 16:04:20.348][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.349][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.350][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-14 16:04:20.352][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.354][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-14 16:04:20.355][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.356][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-14 16:04:20.357][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.358][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.360][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.361][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.362][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-14 16:04:20.363][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-14 16:04:20.365][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.371][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-14 16:04:20.372][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-14 16:04:20.373][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.375][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.376][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.377][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-14 16:04:20.378][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-14 16:04:20.379][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-14 16:04:20.380][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-14 16:04:20.381][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-14 16:04:20.382][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-14 16:04:20.384][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.385][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.386][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-14 16:04:20.387][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-14 16:04:20.388][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.389][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.393][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-14 16:04:20.394][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.483][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-14 16:04:20.487][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-14 16:04:20.488][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-14 16:04:20.490][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-14 16:04:20.491][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-14 16:04:20.493][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-14 16:04:20.495][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-14 16:04:20.496][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-14 16:04:20.498][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-14 16:04:20.499][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-14 16:04:20.501][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-14 16:04:20.502][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-14 16:04:20.504][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-14 16:04:20.505][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-14 16:04:20.507][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-14 16:04:20.508][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-14 16:04:20.510][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-14 16:04:20.511][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-14 16:04:20.513][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-14 16:04:20.515][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-14 16:04:20.516][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-14 16:04:20.518][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-14 16:04:20.519][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-14 16:04:20.521][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-14 16:04:20.522][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-14 16:04:20.524][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-14 16:04:20.526][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-14 16:04:20.527][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-14 16:04:20.529][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-14 16:04:20.530][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-14 16:04:20.532][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-14 16:04:20.533][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-14 16:04:20.535][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-14 16:04:20.536][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-14 16:04:20.538][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-14 16:04:20.540][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-14 16:04:20.541][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-14 16:04:20.543][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-14 16:04:20.544][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-14 16:04:20.546][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-14 16:04:20.547][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-14 16:04:20.549][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-14 16:04:20.551][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-14 16:04:20.552][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-14 16:04:20.554][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-14 16:04:20.555][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-14 16:04:20.557][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-14 16:04:20.558][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-14 16:04:20.560][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-14 16:04:20.562][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-14 16:04:20.563][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-14 16:04:20.570][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-14 16:04:20.572][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-14 16:04:20.574][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-14 16:04:20.575][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-14 16:04:20.577][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-14 16:04:20.578][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-14 16:04:20.580][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-14 16:04:20.581][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-14 16:04:20.583][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-14 16:04:20.584][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-14 16:04:20.586][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-14 16:04:20.588][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-14 16:04:20.589][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-14 16:04:20.591][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-14 16:04:20.592][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-14 16:04:20.594][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-14 16:04:20.595][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-14 16:04:20.597][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-14 16:04:20.599][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-14 16:04:20.600][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-14 16:04:20.602][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-14 16:04:20.604][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-14 16:04:20.605][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-14 16:04:20.607][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-14 16:04:20.608][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-14 16:04:20.610][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-14 16:04:20.612][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-14 16:04:20.613][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-14 16:04:20.615][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-14 16:04:20.616][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-14 16:04:20.618][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-14 16:04:20.619][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-14 16:04:20.653][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-14 16:04:20.656][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-06-14 16:04:20.659][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-14 16:04:20.660][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.662][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.WARN [2025-06-14 16:04:20.793][private$checkKey] Key persistent.cache.impl is deprecated. Persistent cache is now handled by the fscache CRAN package. This field is now useless.
biodb.WARN [2025-06-14 16:04:20.802][private$checkKey] Key persistent.cache.impl is deprecated. Persistent cache is now handled by the fscache CRAN package. This field is now useless.
biodb.DEBUG[2025-06-14 16:04:20.814][biodb$getConfig()$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-14 16:04:20.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-14 16:04:20.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-14 16:04:20.825][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbHmdb.Rcheck/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-06-14 16:04:20.834][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-06-14 16:04:20.837][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.838][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.839][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.840][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-14 16:04:20.841][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.843][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-06-14 16:04:20.844][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.845][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.846][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-14 16:04:20.847][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-14 16:04:20.848][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.850][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-06-14 16:04:20.851][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-06-14 16:04:20.852][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-06-14 16:04:20.853][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-14 16:04:20.855][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-14 16:04:20.855][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-06-14 16:04:20.855][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-06-14 16:04:20.856][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-14 16:04:20.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-14 16:04:20.858][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-14 16:04:20.859][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-14 16:04:20.860][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-14 16:04:20.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-14 16:04:20.863][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-14 16:04:20.864][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-14 16:04:20.864][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-06-14 16:04:20.865][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-14 16:04:20.866][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-14 16:04:20.867][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-14 16:04:20.868][self$setPropertyValue]
biodb.DEBUG[2025-06-14 16:04:20.874][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-06-14 16:04:20.875][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-14 16:04:20.877][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-14 16:04:20.879][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-14 16:04:20.881][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-14 16:04:20.901][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-06-14 16:04:20.915][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.INFO [2025-06-14 16:04:20.925][biodb::testThat]
biodb.INFO [2025-06-14 16:04:20.926][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-06-14 16:04:20.928][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-14 16:04:20.929][biodb::testThat]
biodb.TRACE[2025-06-14 16:04:20.936][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbHmdb.Rcheck/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-06-14 16:04:20.939][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-14 16:04:20.942][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-14 16:04:20.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-14 16:04:20.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:20.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:20.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:20.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:20.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:20.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-14 16:04:20.981][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:20.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:20.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:20.985][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:20.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.013][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.015][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.017][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.039][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.044][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:21.045][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:21.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.048][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.049][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:21.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:21.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.054][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:21.055][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:21.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.058][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.059][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:21.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:21.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.068][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.074][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.075][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.078][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.084][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.085][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.088][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.094][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.098][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.104][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:21.105][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:21.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.108][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:21.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:21.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.114][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:21.116][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:21.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.118][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:21.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:21.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.124][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:21.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:21.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.128][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:21.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.134][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:21.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:21.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.142][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:21.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:21.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.150][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.152][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:21.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:21.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.162][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:21.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:21.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.169][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.172][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.178][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:21.180][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:21.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.182][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:21.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:21.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.188][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:21.190][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:21.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.192][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:21.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:21.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.198][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-14 16:04:21.200][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:21.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.202][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.204][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-14 16:04:21.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:21.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.250][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:21.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:21.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.255][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.260][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:21.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:21.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.265][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:21.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:21.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:21.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:21.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.279][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:21.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:21.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:21.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:21.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:21.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:21.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:21.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:21.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:21.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:21.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:21.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:21.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:21.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:21.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.355][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:21.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:21.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.360][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.364][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:21.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:21.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:21.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:21.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:21.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:21.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.417][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.422][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:21.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:21.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:21.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:21.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.509][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.518][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:21.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:21.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:21.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:21.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:21.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:21.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.537][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-14 16:04:21.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.556][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-14 16:04:21.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:21.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.605][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.615][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-14 16:04:21.653][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-06-14 16:04:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-14 16:04:21.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-14 16:04:21.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-14 16:04:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-14 16:04:21.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.666][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-14 16:04:21.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-14 16:04:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-14 16:04:21.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-14 16:04:21.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.688][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.735][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-14 16:04:21.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.768][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.771][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:21.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:21.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.792][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.797][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.801][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.806][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.807][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.810][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.811][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:21.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.839][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.840][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.842][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:21.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.875][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:21.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.908][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:21.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.928][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.933][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.940][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.943][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.944][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:21.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.978][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.981][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:21.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:21.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:21.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:21.997][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:21.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.002][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:22.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:22.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.006][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:22.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:22.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.011][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:22.013][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:22.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.015][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.016][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:22.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:22.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:22.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:22.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:22.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:22.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:22.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.045][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:22.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:22.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.048][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:22.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:22.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.069][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.074][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.079][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.080][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.082][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.084][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.155][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.156][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.158][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.190][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.191][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.194][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.225][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.226][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.228][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:22.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:22.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:22.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:22.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:22.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:22.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.261][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:22.262][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:22.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.264][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:22.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:22.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:22.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:22.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:22.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:22.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:22.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:22.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.300][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:22.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:22.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.303][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:22.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:22.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.335][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.337][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.353][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.358][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.363][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.367][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.369][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.371][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.372][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.386][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-14 16:04:22.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-14 16:04:22.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.390][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.396][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.398][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-14 16:04:22.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.400][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.406][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.407][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-14 16:04:22.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.410][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-14 16:04:22.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-14 16:04:22.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.420][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.426][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:22.427][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-14 16:04:22.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.430][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.436][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.437][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-14 16:04:22.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.439][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.446][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.447][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-14 16:04:22.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.449][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.455][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.461][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-14 16:04:22.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.464][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.470][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:22.471][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:22.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.474][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-14 16:04:22.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-14 16:04:22.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.484][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-14 16:04:22.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-14 16:04:22.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.493][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-14 16:04:22.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.503][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:22.511][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-14 16:04:22.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.513][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.519][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-14 16:04:22.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.522][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.529][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:22.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:22.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.532][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:22.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-14 16:04:22.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.542][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.548][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:22.550][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:22.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.552][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-14 16:04:22.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-14 16:04:22.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.562][ef$get] fields variable is a list.
biodb.INFO [2025-06-14 16:04:22.573][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.575][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-06-14 16:04:22.576][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-14 16:04:22.577][biodb::testThat]
biodb.DEBUG[2025-06-14 16:04:22.590][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-06-14 16:04:22.595][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-14 16:04:22.601][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-14 16:04:22.654][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-06-14 16:04:22.658][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-06-14 16:04:22.660][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.INFO [2025-06-14 16:04:22.708][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.709][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-06-14 16:04:22.710][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-14 16:04:22.712][biodb::testThat]
biodb.TRACE[2025-06-14 16:04:22.715][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:22.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:22.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.719][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-14 16:04:22.720][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.DEBUG[2025-06-14 16:04:22.744][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-06-14 16:04:22.790][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-14 16:04:22.792][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-14 16:04:22.794][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-06-14 16:04:22.796][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-06-14 16:04:22.807][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.INFO [2025-06-14 16:04:22.831][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.832][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-06-14 16:04:22.834][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-14 16:04:22.835][biodb::testThat]
biodb.DEBUG[2025-06-14 16:04:22.844][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-06-14 16:04:22.846][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-14 16:04:22.847][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-14 16:04:22.849][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-06-14 16:04:22.851][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-06-14 16:04:22.852][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.INFO [2025-06-14 16:04:22.866][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.868][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-06-14 16:04:22.869][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-14 16:04:22.870][biodb::testThat]
biodb.DEBUG[2025-06-14 16:04:22.875][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-06-14 16:04:22.876][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-14 16:04:22.878][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-14 16:04:22.880][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-06-14 16:04:22.881][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-06-14 16:04:22.882][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.INFO [2025-06-14 16:04:22.902][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.903][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-06-14 16:04:22.904][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-14 16:04:22.905][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.922][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.923][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-06-14 16:04:22.924][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-14 16:04:22.925][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.941][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.943][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-06-14 16:04:22.945][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-14 16:04:22.947][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.963][biodb::testThat]
biodb.INFO [2025-06-14 16:04:22.964][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-06-14 16:04:22.966][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-14 16:04:22.967][biodb::testThat]
biodb.TRACE[2025-06-14 16:04:22.992][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:22.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:22.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:22.996][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:22.997][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:22.999][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:23.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:23.001][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:23.002][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:23.003][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:23.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:23.006][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:23.007][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-14 16:04:23.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-14 16:04:23.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:23.011][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:23.012][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-14 16:04:23.013][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-14 16:04:23.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:23.015][ef$get] fields variable is a list.
biodb.TRACE[2025-06-14 16:04:23.017][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:23.018][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-14 16:04:23.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-14 16:04:23.020][ef$get] fields variable is a list.
biodb.INFO [2025-06-14 16:04:23.021][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-06-14 16:04:23.023][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-06-14 16:04:23.024][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-14 16:04:23.025][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-14 16:04:23.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-14 16:04:23.027][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-14 16:04:23.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-14 16:04:23.034][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-14 16:04:23.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 8 | WARN 2 | SKIP 0 | PASS 103 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:42:1'): RT unit is defined when there is an RT value. ──
Error in `private$doExtractDownload()`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<HmdbMtbC>`, opt = `<named list>`)
 3.   └─conn$getBiodb()$getFactory()$getEntry(...)
 4.     └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
 5.       └─conn$getEntryContent(ids)
 6.         └─self$download()
 7.           └─private$doExtractDownload()
── Error ('test_long_100_generic.R:42:1'): We can search for an entry by searchable field ──
Error in `cch$getTmpFolderPath()`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<HmdbMtbC>`, opt = `<named list>`)
 3.   └─conn$getEntry(id, drop = TRUE)
 4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
 5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
 6.         └─conn$getEntryContent(ids)
 7.           └─self$download()
 8.             └─private$doExtractDownload()
── Error ('test_long_100_generic.R:42:1'): We can search for an entry by name. ──
Error in `cch$getTmpFolderPath()`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<HmdbMtbC>`, opt = `<named list>`)
 3.   └─conn$getEntry(id, drop = TRUE)
 4.     └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
 5.       └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
 6.         └─conn$getEntryContent(ids)
 7.           └─self$download()
 8.             └─private$doExtractDownload()
── Error ('test_long_100_generic.R:42:1'): We can load an entry from the database. ──
Error in `cch$getTmpFolderPath()`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<HmdbMtbC>`, opt = `<named list>`)
 3.   └─opt$refEntries$getRealEntry(id)
 4.     └─self$getRealEntries(ids = id)
 5.       └─private$bdb$getFactory()$getEntry(...)
 6.         └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
 7.           └─conn$getEntryContent(ids)
 8.             └─self$download()
 9.               └─private$doExtractDownload()
── Error ('test_long_100_generic.R:42:1'): We can get a URL pointing to the entry page. ──
Error in `FUN(X[[i]], ...)`: object 'BiodbUrl' not found
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<HmdbMtbC>`, opt = `<named list>`)
 3.   └─conn$getEntryPageUrl(ref.ids)
 4.     └─private$doGetEntryPageUrl(entry.id)
 5.       └─base::vapply(id, fct, FUN.VALUE = "")
 6.         └─biodbHmdb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:42:1'): We can get a URL pointing to the entry image. ──
Error in `FUN(X[[i]], ...)`: object 'BiodbUrl' not found
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<HmdbMtbC>`, opt = `<named list>`)
 3.   └─conn$getEntryImageUrl(ref.ids)
 4.     └─private$doGetEntryImageUrl(entry.id)
 5.       └─base::vapply(id, fct, FUN.VALUE = "")
 6.         └─biodbHmdb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:42:1'): The entry page URL can be downloaded. ──
Error in `FUN(X[[i]], ...)`: object 'BiodbUrl' not found
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<HmdbMtbC>`, opt = `<named list>`)
 3.   └─conn$getEntryPageUrl(ref.ids[[1]])
 4.     └─private$doGetEntryPageUrl(entry.id)
 5.       └─base::vapply(id, fct, FUN.VALUE = "")
 6.         └─biodbHmdb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:42:1'): The entry image URL can be downloaded. ──
Error in `FUN(X[[i]], ...)`: object 'BiodbUrl' not found
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<HmdbMtbC>`, opt = `<named list>`)
 3.   └─conn$getEntryImageUrl(ref.ids[[1]])
 4.     └─private$doGetEntryImageUrl(entry.id)
 5.       └─base::vapply(id, fct, FUN.VALUE = "")
 6.         └─biodbHmdb (local) FUN(X[[i]], ...)

[ FAIL 8 | WARN 2 | SKIP 0 | PASS 103 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbHmdb_1.15.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbHmdb.Rcheck'
* using R version 4.5.0 (2025-04-11 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.15.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... OK
* checking tests in 'longtests' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'longtests/testthat.R' failed.
Last 13 lines of output:
   6.         └─biodbHmdb (local) FUN(X[[i]], ...)
  ── Error ('test_long_100_generic.R:42:1'): The entry image URL can be downloaded. ──
  Error in `FUN(X[[i]], ...)`: object 'BiodbUrl' not found
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<HmdbMtbC>`, opt = `<named list>`)
   3.   └─conn$getEntryImageUrl(ref.ids[[1]])
   4.     └─private$doGetEntryImageUrl(entry.id)
   5.       └─base::vapply(id, fct, FUN.VALUE = "")
   6.         └─biodbHmdb (local) FUN(X[[i]], ...)
  
  [ FAIL 8 | WARN 2 | SKIP 0 | PASS 103 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR, 2 WARNINGs, 1 NOTE
See
  'F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

* installing *source* package 'biodbHmdb' ...
** this is package 'biodbHmdb' version '1.15.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbHmdb.Rcheck/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)