Back to Long Tests report for BioC 3.22

This page was generated on 2025-06-07 23:55 -0400 (Sat, 07 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4795
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4536
lconwaymacOS 12.7.1 Montereyx86_644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4574
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/29HostnameOS / ArchCHECK
biodbChebi 1.15.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-06-07 09:55 -0400 (Sat, 07 Jun 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: 1a7ef22
git_last_commit_date: 2025-04-15 12:39:10 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK  
palomino8Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on lconway

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.0.tar.gz
StartedAt: 2025-06-07 16:01:15 -0400 (Sat, 07 Jun 2025)
EndedAt: 2025-06-07 16:02:43 -0400 (Sat, 07 Jun 2025)
EllapsedTime: 87.6 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-06-07 16:01:53.887][biodb::testContext]
biodb.INFO [2025-06-07 16:01:53.890][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-07 16:01:53.891][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-06-07 16:01:53.892][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-07 16:01:53.893][biodb::testContext]
biodb.INFO [2025-06-07 16:01:53.898][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.0.
biodb.DEBUG[2025-06-07 16:01:53.900][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-06-07 16:01:53.906][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-07 16:01:53.907][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-07 16:01:53.908][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-07 16:01:53.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.912][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-07 16:01:53.927][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-07 16:01:53.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.931][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-07 16:01:53.932][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-07 16:01:53.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.935][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-07 16:01:53.936][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-07 16:01:53.937][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-07 16:01:53.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.940][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-07 16:01:53.941][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-07 16:01:53.942][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-07 16:01:53.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.945][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-07 16:01:53.946][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-07 16:01:53.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.949][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-07 16:01:53.950][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-07 16:01:53.951][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-07 16:01:53.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.954][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-07 16:01:53.955][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-07 16:01:53.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.958][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-07 16:01:53.959][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-07 16:01:53.960][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-07 16:01:53.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.963][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-07 16:01:53.964][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-07 16:01:53.965][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-07 16:01:53.966][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-07 16:01:53.967][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-07 16:01:53.968][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-07 16:01:53.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.971][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-07 16:01:53.972][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-07 16:01:53.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.975][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-07 16:01:53.976][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-07 16:01:53.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.979][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-07 16:01:53.980][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-07 16:01:53.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.983][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-07 16:01:53.984][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-07 16:01:53.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.987][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-07 16:01:53.988][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-07 16:01:53.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:53.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:53.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:53.991][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-07 16:01:53.992][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-07 16:01:54.011][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-07 16:01:54.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.014][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-07 16:01:54.016][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-07 16:01:54.016][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-07 16:01:54.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.022][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-07 16:01:54.048][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.068][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-07 16:01:54.069][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.070][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-07 16:01:54.070][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.071][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.072][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.073][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.074][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-07 16:01:54.075][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-07 16:01:54.075][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.076][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-07 16:01:54.077][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-07 16:01:54.078][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.079][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.080][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-07 16:01:54.080][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-07 16:01:54.080][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-07 16:01:54.080][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-07 16:01:54.080][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-07 16:01:54.081][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-07 16:01:54.081][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-07 16:01:54.082][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-07 16:01:54.083][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-07 16:01:54.084][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-07 16:01:54.085][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-07 16:01:54.085][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.086][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.087][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-07 16:01:54.088][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-07 16:01:54.089][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.089][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.090][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-07 16:01:54.092][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.093][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-07 16:01:54.094][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.094][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-07 16:01:54.095][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.096][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.097][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.098][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.099][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-07 16:01:54.100][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-07 16:01:54.101][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.101][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-07 16:01:54.102][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-07 16:01:54.103][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.104][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.105][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-07 16:01:54.105][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-07 16:01:54.105][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-07 16:01:54.105][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-07 16:01:54.105][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-07 16:01:54.106][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-07 16:01:54.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-07 16:01:54.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-07 16:01:54.108][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-07 16:01:54.109][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-07 16:01:54.110][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-07 16:01:54.111][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.112][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.112][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-07 16:01:54.113][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-07 16:01:54.114][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.115][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.116][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-07 16:01:54.118][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.118][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-07 16:01:54.119][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.120][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-07 16:01:54.121][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.122][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.123][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.124][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.124][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-07 16:01:54.125][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-07 16:01:54.126][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.127][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-07 16:01:54.128][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-07 16:01:54.129][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.130][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.130][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.131][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-07 16:01:54.132][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-07 16:01:54.133][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-07 16:01:54.134][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-07 16:01:54.135][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-07 16:01:54.135][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-07 16:01:54.136][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.137][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.138][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-07 16:01:54.139][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-07 16:01:54.140][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.140][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.141][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-07 16:01:54.143][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.144][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-07 16:01:54.145][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.146][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-07 16:01:54.147][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.147][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.148][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.149][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.150][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-07 16:01:54.151][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-07 16:01:54.152][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.153][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-07 16:01:54.154][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-07 16:01:54.155][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.155][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.156][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.157][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-07 16:01:54.158][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-07 16:01:54.159][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-07 16:01:54.160][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-07 16:01:54.161][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-07 16:01:54.161][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-07 16:01:54.162][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.163][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.164][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-07 16:01:54.165][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-07 16:01:54.166][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.167][self$setPropertyValue]
biodb.DEBUG[2025-06-07 16:01:54.170][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-07 16:01:54.170][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.243][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-07 16:01:54.247][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-07 16:01:54.248][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-07 16:01:54.250][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-07 16:01:54.251][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-07 16:01:54.252][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-07 16:01:54.253][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-07 16:01:54.254][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-07 16:01:54.256][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-07 16:01:54.257][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-07 16:01:54.258][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-07 16:01:54.259][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-07 16:01:54.260][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-07 16:01:54.262][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-07 16:01:54.263][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-07 16:01:54.264][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-07 16:01:54.265][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-07 16:01:54.267][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-07 16:01:54.268][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-07 16:01:54.269][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-07 16:01:54.270][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-07 16:01:54.271][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-07 16:01:54.273][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-07 16:01:54.274][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-07 16:01:54.275][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-07 16:01:54.276][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-07 16:01:54.278][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-07 16:01:54.279][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-07 16:01:54.280][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-07 16:01:54.281][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-07 16:01:54.282][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-07 16:01:54.284][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-07 16:01:54.285][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-07 16:01:54.286][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-07 16:01:54.287][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-07 16:01:54.288][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-07 16:01:54.290][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-07 16:01:54.291][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-07 16:01:54.292][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-07 16:01:54.293][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-07 16:01:54.294][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-07 16:01:54.296][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-07 16:01:54.297][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-07 16:01:54.298][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-07 16:01:54.299][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-07 16:01:54.300][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-07 16:01:54.302][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-07 16:01:54.303][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-07 16:01:54.304][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-07 16:01:54.305][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-07 16:01:54.307][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-07 16:01:54.308][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-07 16:01:54.309][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-07 16:01:54.310][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-07 16:01:54.311][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-07 16:01:54.313][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-07 16:01:54.314][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-07 16:01:54.315][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-07 16:01:54.316][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-07 16:01:54.318][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-07 16:01:54.319][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-07 16:01:54.320][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-07 16:01:54.321][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-07 16:01:54.322][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-07 16:01:54.324][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-07 16:01:54.325][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-07 16:01:54.326][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-07 16:01:54.327][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-07 16:01:54.329][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-07 16:01:54.330][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-07 16:01:54.331][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-07 16:01:54.332][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-07 16:01:54.334][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-07 16:01:54.335][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-07 16:01:54.336][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-07 16:01:54.337][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-07 16:01:54.338][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-07 16:01:54.340][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-07 16:01:54.341][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-07 16:01:54.342][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-07 16:01:54.343][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-07 16:01:54.344][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-07 16:01:54.346][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-07 16:01:54.351][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-07 16:01:54.352][initialize] This is biodb version 1.17.0.
biodb.DEBUG[2025-06-07 16:01:54.355][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-07 16:01:54.356][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.357][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-07 16:01:54.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:54.460][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-06-07 16:01:54.469][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-06-07 16:01:54.470][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.471][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.472][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.473][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-07 16:01:54.474][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.475][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.476][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.477][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-06-07 16:01:54.478][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-07 16:01:54.478][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-07 16:01:54.479][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.480][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-06-07 16:01:54.481][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-06-07 16:01:54.482][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-06-07 16:01:54.483][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-07 16:01:54.484][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-07 16:01:54.484][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-07 16:01:54.484][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-07 16:01:54.485][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-07 16:01:54.486][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-07 16:01:54.486][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-07 16:01:54.487][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-07 16:01:54.488][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-07 16:01:54.489][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-07 16:01:54.490][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-07 16:01:54.491][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-07 16:01:54.491][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-06-07 16:01:54.492][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-07 16:01:54.492][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-07 16:01:54.493][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-07 16:01:54.494][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-06-07 16:01:54.494][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-06-07 16:01:54.499][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-07 16:01:54.501][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-07 16:01:54.502][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-06-07 16:01:54.503][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-07 16:01:54.505][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-07 16:01:54.506][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-07 16:01:54.527][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-06-07 16:01:54.528][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-06-07 16:01:54.532][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-06-07 16:01:54.535][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-06-07 16:01:54.539][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-07 16:01:54.540][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-07 16:01:54.541][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-06-07 16:01:54.542][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-06-07 16:01:54.579][biodb::testThat]
biodb.INFO [2025-06-07 16:01:54.580][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-06-07 16:01:54.581][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:01:54.581][biodb::testThat]
biodb.TRACE[2025-06-07 16:01:54.585][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-06-07 16:01:54.586][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-07 16:01:54.589][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-07 16:01:54.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-07 16:01:54.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:54.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:54.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:54.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:54.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:54.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-07 16:01:54.619][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.622][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.637][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:54.638][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:54.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.639][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:54.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.666][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:54.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:54.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.669][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:54.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:54.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.676][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:54.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.681][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:54.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:54.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.683][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:54.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:54.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.688][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:54.689][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:54.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.690][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:54.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.695][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:01:54.696][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:54.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.698][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.699][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:01:54.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:54.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:54.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:54.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.705][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:54.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:54.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.710][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:54.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:54.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.712][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:54.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.717][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:01:54.718][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:54.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.720][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:01:54.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:54.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:54.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.733][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-07 16:01:54.799][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-06-07 16:01:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:54.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:54.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:54.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:54.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:54.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:54.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-07 16:01:54.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-07 16:01:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.849][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-07 16:01:54.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-07 16:01:54.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-07 16:01:54.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-07 16:01:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.856][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-07 16:01:54.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-07 16:01:54.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.954][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.956][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:54.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.983][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:54.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:54.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:54.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.010][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.011][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.013][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.014][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.036][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.036][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.038][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.061][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.064][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.089][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.112][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.113][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.115][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.116][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.142][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.143][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.144][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.170][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.171][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.172][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.198][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.223][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.248][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.260][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.261][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.263][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.268][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.269][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.271][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.280][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.281][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.283][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.290][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.297][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.302][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.303][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.305][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.310][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.312][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.317][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.320][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.325][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.326][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.327][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.332][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.335][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.340][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.341][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.342][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.362][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-06-07 16:01:55.396][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-07 16:01:55.397][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-07 16:01:55.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-07 16:01:55.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:55.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:55.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:55.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:55.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:55.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-07 16:01:55.410][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.417][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.436][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.437][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.439][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.440][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.443][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.446][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.452][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.454][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.458][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.461][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.466][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.468][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.469][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.473][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:01:55.474][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.476][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.477][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:01:55.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.483][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.488][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.491][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.495][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:01:55.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.498][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:01:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.505][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-07 16:01:55.549][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-06-07 16:01:55.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-07 16:01:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-07 16:01:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.592][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-07 16:01:55.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-07 16:01:55.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-07 16:01:55.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-07 16:01:55.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-07 16:01:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-07 16:01:55.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.682][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.684][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:55.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:55.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.710][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:55.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.733][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.734][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.736][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:55.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.759][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.761][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.774][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:01:55.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.785][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:01:55.785][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.787][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.788][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:01:55.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.814][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.817][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:55.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.840][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.842][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:55.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.858][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.865][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.866][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.868][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.869][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:55.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.890][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.893][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:55.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.905][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.909][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.916][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.917][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.918][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.919][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:55.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.942][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.943][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:55.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:55.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.972][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:55.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:55.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:55.998][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:55.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:55.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.010][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.012][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.017][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:56.018][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:56.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.020][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.025][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:56.026][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:56.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.027][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.035][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.042][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.048][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.050][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.055][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.056][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.057][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.063][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.065][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.071][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.072][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.075][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.080][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:56.081][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:56.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.083][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.087][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:56.088][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:56.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.090][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.096][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-06-07 16:01:56.097][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-07 16:01:56.098][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-07 16:01:56.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-07 16:01:56.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:56.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:56.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:56.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:56.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:56.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-07 16:01:56.115][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.118][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.122][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:56.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:56.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.125][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:56.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:56.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.130][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:56.131][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:56.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.132][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:56.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.140][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.147][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.152][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.153][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.154][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.159][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:01:56.160][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.161][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.162][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:01:56.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.166][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.167][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.169][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.173][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:56.174][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:56.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.176][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.181][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:01:56.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.183][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.184][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:01:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.188][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:56.189][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:56.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.190][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:56.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:56.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-07 16:01:56.230][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-06-07 16:01:56.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-07 16:01:56.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-07 16:01:56.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-07 16:01:56.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-07 16:01:56.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-07 16:01:56.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-07 16:01:56.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-07 16:01:56.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-07 16:01:56.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:01:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.338][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.339][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.341][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:56.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:56.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:56.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:56.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.363][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:56.364][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:56.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.366][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:56.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.393][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.394][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.396][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.421][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.440][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.444][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.445][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.447][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.447][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.469][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.470][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.472][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.497][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:56.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:56.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:56.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:56.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.521][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:56.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:56.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.524][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:56.525][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:56.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.527][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.528][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:56.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:56.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.539][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.549][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.550][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.552][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.553][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:56.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:56.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:56.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:56.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.576][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:56.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:56.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.578][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:56.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:56.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:56.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:56.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:56.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:56.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:56.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.602][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:56.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.604][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:56.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:56.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.617][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:01:56.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:01:56.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.620][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.625][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:01:56.626][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:01:56.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.628][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.632][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:01:56.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:01:56.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.635][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.640][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:01:56.641][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:01:56.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.643][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:01:56.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.650][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.660][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.661][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:01:56.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.662][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.667][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:01:56.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.670][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:01:56.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.677][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.682][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:01:56.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.685][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.689][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:01:56.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:01:56.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.692][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:01:56.697][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:01:56.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:01:56.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:01:56.699][ef$get] fields variable is a list.
biodb.INFO [2025-06-07 16:01:56.708][biodb::testThat]
biodb.INFO [2025-06-07 16:01:56.709][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-06-07 16:01:56.710][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:01:56.710][biodb::testThat]
biodb.DEBUG[2025-06-07 16:01:56.712][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-06-07 16:01:56.718][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-06-07 16:01:56.726][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2025-06-07 16:01:56.728][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2025-06-07 16:01:56.730][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-06-07 16:01:56.731][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-07 16:01:56.732][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-07 16:01:56.733][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-07 16:01:56.734][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-07 16:01:56.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-07 16:01:56.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:01:56.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:01:56.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:01:56.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:01:56.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:01:56.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-07 16:01:56.748][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2025-06-07 16:01:56.766][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-06-07 16:01:56.767][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-06-07 16:01:56.768][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2025-06-07 16:02:07.828][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2025-06-07 16:02:18.168][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-06-07 16:02:18.170][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2025-06-07 16:02:18.181][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.TRACE[2025-06-07 16:02:18.183][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml"
biodb.DEBUG[2025-06-07 16:02:18.185][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-07 16:02:18.186][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-06-07 16:02:18.187][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-06-07 16:02:18.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-07 16:02:18.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:02:18.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:02:18.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:02:18.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:02:18.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:02:18.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-07 16:02:18.198][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.200][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.213][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:02:18.214][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:02:18.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.215][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.216][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:02:18.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:02:18.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.219][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:02:18.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:02:18.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.222][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.223][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:02:18.224][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:02:18.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.225][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.226][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:02:18.227][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:02:18.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.228][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.229][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:02:18.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:02:18.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.232][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.232][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:18.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:18.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.235][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:02:18.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:02:18.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.238][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.239][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:02:18.239][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:02:18.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.241][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:02:18.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:02:18.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.244][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-07 16:02:18.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-07 16:02:18.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:02:18.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:02:18.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:02:18.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:02:18.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:02:18.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-07 16:02:18.276][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.278][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.283][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:02:18.283][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:02:18.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.285][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:02:18.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:02:18.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.289][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:02:18.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:02:18.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.291][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:02:18.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:02:18.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:02:18.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:02:18.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.302][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:02:18.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:02:18.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:02:18.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:02:18.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.308][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:02:18.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:02:18.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.312][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:02:18.313][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:02:18.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.315][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.316][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:02:18.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:02:18.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.319][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:02:18.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:02:18.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.321][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.322][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:02:18.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:02:18.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.326][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:18.327][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:18.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.328][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:18.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:18.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.332][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:02:18.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:02:18.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.334][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:02:18.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:02:18.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.339][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:02:18.339][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:02:18.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.341][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:02:18.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:02:18.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.345][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:02:18.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:02:18.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.347][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:02:18.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:02:18.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-07 16:02:18.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-07 16:02:18.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:02:18.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:02:18.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:02:18.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:02:18.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:02:18.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-07 16:02:18.382][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.385][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.393][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:02:18.394][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:02:18.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.395][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.396][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-07 16:02:18.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-07 16:02:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.399][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:02:18.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:02:18.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.401][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-07 16:02:18.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-07 16:02:18.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.405][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:02:18.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:02:18.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.407][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-07 16:02:18.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-07 16:02:18.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.411][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:02:18.412][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:02:18.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.413][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-07 16:02:18.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-07 16:02:18.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.417][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:02:18.418][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:02:18.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.419][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.420][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:02:18.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-07 16:02:18.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.423][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:02:18.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:02:18.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.425][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.426][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-07 16:02:18.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-07 16:02:18.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:18.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:18.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.431][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:18.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:18.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.435][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:02:18.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:02:18.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.437][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:02:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:02:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.441][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:02:18.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:02:18.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.443][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.444][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-07 16:02:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-07 16:02:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:02:18.448][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:02:18.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.449][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-07 16:02:18.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-07 16:02:18.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-07 16:02:18.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:18.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-07 16:02:18.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-07 16:02:18.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-07 16:02:18.505][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2025-06-07 16:02:18.506][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-06-07 16:02:18.519][biodb::testThat]
biodb.INFO [2025-06-07 16:02:18.519][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-06-07 16:02:18.520][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:18.521][biodb::testThat]
biodb.TRACE[2025-06-07 16:02:18.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:02:18.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:02:18.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:18.525][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-07 16:02:18.526][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.INFO [2025-06-07 16:02:18.687][biodb::testThat]
biodb.INFO [2025-06-07 16:02:18.688][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-06-07 16:02:18.689][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:18.689][biodb::testThat]
biodb.INFO [2025-06-07 16:02:18.721][biodb::testThat]
biodb.INFO [2025-06-07 16:02:18.722][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-06-07 16:02:18.723][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:18.724][biodb::testThat]
biodb.INFO [2025-06-07 16:02:18.767][biodb::testThat]
biodb.INFO [2025-06-07 16:02:18.768][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-06-07 16:02:18.769][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:18.770][biodb::testThat]
biodb.INFO [2025-06-07 16:02:18.777][biodb::testThat]
biodb.INFO [2025-06-07 16:02:18.777][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-06-07 16:02:18.778][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:18.779][biodb::testThat]
biodb.INFO [2025-06-07 16:02:18.786][biodb::testThat]
biodb.INFO [2025-06-07 16:02:18.787][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-06-07 16:02:18.788][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:18.788][biodb::testThat]
biodb.DEBUG[2025-06-07 16:02:18.791][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-06-07 16:02:29.444][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-06-07 16:02:40.409][biodb::testThat]
biodb.INFO [2025-06-07 16:02:40.431][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-06-07 16:02:40.432][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:40.433][biodb::testThat]
biodb.DEBUG[2025-06-07 16:02:40.790][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-06-07 16:02:41.142][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:02:41.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:02:41.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:41.145][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:41.146][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:41.146][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:41.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:41.148][ef$get] fields variable is a list.
biodb.INFO [2025-06-07 16:02:41.150][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.150][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-06-07 16:02:41.151][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:41.152][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.188][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.189][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-06-07 16:02:41.189][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:41.190][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.205][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.206][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-06-07 16:02:41.207][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:41.208][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.224][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.225][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-06-07 16:02:41.226][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:41.227][biodb::testThat]
biodb.TRACE[2025-06-07 16:02:41.241][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-07 16:02:41.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-07 16:02:41.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:41.247][ef$get] fields variable is a list.
biodb.TRACE[2025-06-07 16:02:41.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:41.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-07 16:02:41.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-07 16:02:41.252][ef$get] fields variable is a list.
biodb.INFO [2025-06-07 16:02:41.253][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.254][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-06-07 16:02:41.255][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:41.256][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.275][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.276][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-06-07 16:02:41.277][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-07 16:02:41.278][biodb::testThat]
biodb.INFO [2025-06-07 16:02:41.293][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-06-07 16:02:41.295][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-06-07 16:02:41.296][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-06-07 16:02:41.297][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-07 16:02:41.298][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-07 16:02:41.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-07 16:02:41.300][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-07 16:02:41.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-07 16:02:41.302][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-07 16:02:41.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 219 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): RT unit is defined when there is an RT value. ──
Error in `eval_bare(expr, quo_get_env(quo))`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(...)
 4.     └─testthat::quasi_label(enquo(object), label, arg = "object")
 5.       └─rlang::eval_bare(expr, quo_get_env(quo))
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
!is.null(entry) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Error in `entry$getFieldValue(f)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
!is.null(entry) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
any(vapply(entries, is.null, FUN.VALUE = TRUE)) is not FALSE

`actual`:   TRUE 
`expected`: FALSE
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─opt$refEntries$getRealEntry(id)
 4.     └─self$getRealEntries(ids = id)
 5.       └─testthat::expect_false(any(vapply(entries, is.null, FUN.VALUE = TRUE)))
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
`e` inherits from `'NULL'` not `'character'`.
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_is(e, "BiodbEntry")
── Failure ('test_long_100_generic.R:17:1'): We can search for a compound ──────
!is.null(entry) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for a compound ────────
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)

[ FAIL 14 | WARN 0 | SKIP 0 | PASS 219 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.0 Patched (2025-04-21 r88169)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  ── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
  Error in `e$hasField(mf)`: attempt to apply non-function
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  
  [ FAIL 14 | WARN 0 | SKIP 0 | PASS 219 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)