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This page was generated on 2025-08-09 12:08 -0400 (Sat, 09 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4553
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2312/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
zellkonverter 1.19.2  (landing page)
Luke Zappia
Snapshot Date: 2025-08-08 13:45 -0400 (Fri, 08 Aug 2025)
git_url: https://git.bioconductor.org/packages/zellkonverter
git_branch: devel
git_last_commit: 51dc46a
git_last_commit_date: 2025-06-19 04:01:07 -0400 (Thu, 19 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


BUILD results for zellkonverter on palomino8

To the developers/maintainers of the zellkonverter package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/zellkonverter.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: zellkonverter
Version: 1.19.2
Command: chmod a+r zellkonverter -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data zellkonverter
StartedAt: 2025-08-08 22:56:46 -0400 (Fri, 08 Aug 2025)
EndedAt: 2025-08-08 22:57:35 -0400 (Fri, 08 Aug 2025)
EllapsedTime: 49.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r zellkonverter -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data zellkonverter
###
##############################################################################
##############################################################################


* checking for file 'zellkonverter/DESCRIPTION' ... OK
* preparing 'zellkonverter':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'zellkonverter.Rmd' using rmarkdown
:: [Info] ::  Mirror: https://www.python.org/ftp/python
:: [Info] ::  Mirror: https://downloads.python.org/pypy/versions.json
:: [Info] ::  Mirror: https://api.github.com/repos/oracle/graalpython/releases
:: [Installing] ::  3.13.3 ...
:: [Error] :: error installing "core" component MSI.
:: [Error] :: couldn't install 3.13.3

Quitting from zellkonverter.Rmd:41-50 [read]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `pyenv_python()`:
! Python 3.13.3 does not appear to be installed.
Try installing it with install_python(version = "3.13.3").
---
Backtrace:
    ▆
 1. └─zellkonverter::readH5AD(example_h5ad)
 2.   └─basilisk::basiliskRun(...)
 3.     └─basilisk::basiliskStart(...)
 4.       └─basilisk::obtainEnvironmentPath(env)
 5.         └─basilisk::setupBasiliskEnv(...)
 6.           ├─base::suppressMessages(install_python(version))
 7.           │ └─base::withCallingHandlers(...)
 8.           └─reticulate::install_python(version)
 9.             └─reticulate:::pyenv_python(version = version)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'zellkonverter.Rmd' failed with diagnostics:
Python 3.13.3 does not appear to be installed.
Try installing it with install_python(version = "3.13.3").
--- failed re-building 'zellkonverter.Rmd'

SUMMARY: processing the following file failed:
  'zellkonverter.Rmd'

Error: Vignette re-building failed.
Execution halted