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This page was generated on 2026-02-06 11:32 -0500 (Fri, 06 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4857
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Package 2216/2347HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tLOH 1.19.0  (landing page)
Michelle Webb
Snapshot Date: 2026-02-05 13:40 -0500 (Thu, 05 Feb 2026)
git_url: https://git.bioconductor.org/packages/tLOH
git_branch: devel
git_last_commit: 7e311df
git_last_commit_date: 2025-10-29 11:08:42 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
See other builds for tLOH in R Universe.

CHECK results for tLOH on nebbiolo1

To the developers/maintainers of the tLOH package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tLOH.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: tLOH
Version: 1.19.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:tLOH.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings tLOH_1.19.0.tar.gz
StartedAt: 2026-02-06 04:55:00 -0500 (Fri, 06 Feb 2026)
EndedAt: 2026-02-06 05:02:32 -0500 (Fri, 06 Feb 2026)
EllapsedTime: 451.8 seconds
RetCode: 1
Status:   ERROR  
CheckDir: tLOH.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:tLOH.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings tLOH_1.19.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/tLOH.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘tLOH/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tLOH’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tLOH’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS.md’:
No news entries found.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘tLOH-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hiddenMarkovAnalysis
> ### Title: Run Multi-Step HMM Analysis on tLOHCalcUpdate output
> ### Aliases: hiddenMarkovAnalysis
> 
> ### ** Examples
> 
> data('humanGBMsampleAC')
> data('initialStartProbabilities')
> df <- tLOHCalcUpdate(humanGBMsampleAC,1.25,1.25,500,500,4)
> trProbs <- cbind(c(0.8999,0.1001),c(0.1001,0.8999))
> output <- hiddenMarkovAnalysis(df,initialStartProbabilities,trProbs)
converged at iteration 174 with logLik: -400.4305 
converged at iteration 46 with logLik: -255.5725 
converged at iteration 74 with logLik: -237.3545 
converged at iteration 223 with logLik: -155.8921 
converged at iteration 28 with logLik: -194.115 
converged at iteration 34 with logLik: -193.532 
converged at iteration 100 with logLik: -231.1149 
converged at iteration 101 with logLik: -188.5468 
converged at iteration 31 with logLik: -165.1154 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 238 with logLik: -215.7682 
converged at iteration 76 with logLik: -257.2863 
converged at iteration 49 with logLik: -94.22672 
converged at iteration 80 with logLik: -142.5566 
converged at iteration 49 with logLik: -108.3017 
converged at iteration 71 with logLik: -190.8097 
converged at iteration 103 with logLik: -266.4222 
converged at iteration 2 with logLik: -50.4367 
converged at iteration 127 with logLik: -352.4789 
converged at iteration 24 with logLik: -151.3182 
converged at iteration 30 with logLik: -56.6414 
converged at iteration 84 with logLik: -133.0956 
converged at iteration 74 with logLik: -287.923 
converged at iteration 80 with logLik: -184.31 
converged at iteration 54 with logLik: -188.1016 
converged at iteration 33 with logLik: -148.0392 
converged at iteration 36 with logLik: -139.5007 
converged at iteration 79 with logLik: -176.0456 
converged at iteration 183 with logLik: -144.0437 
converged at iteration 27 with logLik: -116.295 
converged at iteration 24 with logLik: -57.33039 
converged at iteration 63 with logLik: -151.7447 
converged at iteration 81 with logLik: -178.4401 
converged at iteration 66 with logLik: -65.42974 
converged at iteration 123 with logLik: -109.5552 
converged at iteration 91 with logLik: -75.50791 
converged at iteration 74 with logLik: -164.4373 
converged at iteration 96 with logLik: -207.0907 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 1 with logLik: -274.6202 
converged at iteration 83 with logLik: -116.6618 
converged at iteration 23 with logLik: -48.62432 
converged at iteration 75 with logLik: -112.0641 
converged at iteration 114 with logLik: -304.9048 
converged at iteration 290 with logLik: -196.8747 
converged at iteration 71 with logLik: -200.5128 
converged at iteration 65 with logLik: -108.4801 
converged at iteration 30 with logLik: -142.1332 
converged at iteration 114 with logLik: -141.3147 
converged at iteration 65 with logLik: -178.2362 
converged at iteration 70 with logLik: -131.8609 
converged at iteration 22 with logLik: -126.9872 
converged at iteration 32 with logLik: -55.22853 
converged at iteration 53 with logLik: -171.0042 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 53 with logLik: -63.71452 
converged at iteration 91 with logLik: -107.3605 
converged at iteration 31 with logLik: -81.49424 
converged at iteration 46 with logLik: -163.0088 
converged at iteration 55 with logLik: -212.6908 
converged at iteration 36 with logLik: -40.8727 
converged at iteration 114 with logLik: -281.6521 
converged at iteration 67 with logLik: -114.6178 
converged at iteration 67 with logLik: -50.8831 
converged at iteration 95 with logLik: -119.0914 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 34 with logLik: -154.1398 
converged at iteration 75 with logLik: -169.1617 
converged at iteration 65 with logLik: -102.6631 
converged at iteration 23 with logLik: -131.9003 
converged at iteration 68 with logLik: -123.2082 
converged at iteration 1 with logLik: -178.1309 
converged at iteration 62 with logLik: -125.8392 
converged at iteration 38 with logLik: -126.9113 
converged at iteration 19 with logLik: -55.31152 
converged at iteration 23 with logLik: -153.2018 
converged at iteration 36 with logLik: -143.9945 
converged at iteration 92 with logLik: -57.53379 
converged at iteration 1 with logLik: -101.523 
converged at iteration 90 with logLik: -66.04602 
converged at iteration 55 with logLik: -140.13 
converged at iteration 252 with logLik: -185.8288 
converged at iteration 156 with logLik: -30.47605 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 39 with logLik: -112.0321 
converged at iteration 48 with logLik: -35.12297 
converged at iteration 36 with logLik: -95.89316 
converged at iteration 159 with logLik: -261.2018 
converged at iteration 44 with logLik: -182.2042 
converged at iteration 143 with logLik: -170.3868 
converged at iteration 43 with logLik: -95.68043 
converged at iteration 22 with logLik: -130.4625 
converged at iteration 101 with logLik: -118.3728 
converged at iteration 106 with logLik: -170.7968 
converged at iteration 104 with logLik: -129.4988 
converged at iteration 34 with logLik: -120.58 
converged at iteration 98 with logLik: -43.49378 
converged at iteration 53 with logLik: -158.5972 
converged at iteration 28 with logLik: -146.2929 
converged at iteration 43 with logLik: -63.65994 
converged at iteration 138 with logLik: -97.87569 
converged at iteration 49 with logLik: -70.47988 
converged at iteration 57 with logLik: -150.7953 
converged at iteration 177 with logLik: -201.2818 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 156 with logLik: -266.9824 
converged at iteration 45 with logLik: -99.93597 
converged at iteration 48 with logLik: -39.88552 
converged at iteration 53 with logLik: -98.2201 
converged at iteration 59 with logLik: -163.9601 
converged at iteration 45 with logLik: -154.406 
converged at iteration 33 with logLik: -93.51728 
converged at iteration 25 with logLik: -119.8545 
converged at iteration 76 with logLik: -117.6774 
converged at iteration 65 with logLik: -165.7751 
converged at iteration 100 with logLik: -116.7803 
converged at iteration 31 with logLik: -113.8808 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 63 with logLik: -139.6696 
converged at iteration 1 with logLik: -158.2497 
converged at iteration 52 with logLik: -54.38776 
converged at iteration 147 with logLik: -92.28638 
converged at iteration 76 with logLik: -57.1161 
converged at iteration 27 with logLik: -149.7584 
converged at iteration 228 with logLik: -188.9301 
converged at iteration 39 with logLik: -38.25785 
converged at iteration 188 with logLik: -240.7705 
converged at iteration 28 with logLik: -95.82017 
converged at iteration 43 with logLik: -42.13782 
converged at iteration 79 with logLik: -110.4371 
converged at iteration 102 with logLik: -115.2426 
converged at iteration 142 with logLik: -65.16303 
converged at iteration 48 with logLik: -52.98396 
converged at iteration 23 with logLik: -27.87885 
converged at iteration 30 with logLik: -38.36068 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 51 with logLik: -81.65518 
converged at iteration 167 with logLik: 27.97599 
converged at iteration 42 with logLik: -44.89331 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 81 with logLik: -63.8201 
converged at iteration 51 with logLik: -44.83225 
converged at iteration 64 with logLik: -23.11827 
converged at iteration 40 with logLik: -32.38377 
converged at iteration 38 with logLik: -23.83974 
converged at iteration 99 with logLik: -54.36109 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 23 with logLik: -5.039971 
converged at iteration 62 with logLik: -125.3983 
converged at iteration 36 with logLik: -49.03439 
converged at iteration 54 with logLik: -20.3648 
converged at iteration 41 with logLik: -46.82893 
converged at iteration 38 with logLik: -204.2441 
converged at iteration 87 with logLik: -113.0701 
converged at iteration 168 with logLik: -118.0882 
converged at iteration 27 with logLik: -57.67073 
converged at iteration 23 with logLik: -84.05409 
converged at iteration 220 with logLik: -89.86192 
converged at iteration 31 with logLik: -141.3737 
converged at iteration 81 with logLik: -91.51788 
converged at iteration 69 with logLik: -95.00047 
converged at iteration 17 with logLik: -39.8567 
converged at iteration 112 with logLik: -101.6855 
converged at iteration 51 with logLik: -97.72679 
converged at iteration 54 with logLik: -49.61751 
converged at iteration 173 with logLik: -68.4846 
converged at iteration 202 with logLik: -55.88756 
converged at iteration 100 with logLik: -103.4471 
converged at iteration 97 with logLik: -142.2091 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 201 with logLik: -208.7906 
converged at iteration 22 with logLik: -81.14042 
converged at iteration 29 with logLik: -35.4934 
converged at iteration 47 with logLik: -83.05852 
converged at iteration 33 with logLik: -219.5034 
converged at iteration 39 with logLik: -109.5328 
converged at iteration 96 with logLik: -110.6473 
converged at iteration 63 with logLik: -65.35357 
converged at iteration 27 with logLik: -79.36736 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 1 with logLik: -149.747 
converged at iteration 54 with logLik: -74.76706 
converged at iteration 61 with logLik: -78.87167 
converged at iteration 202 with logLik: -21.99613 
converged at iteration 31 with logLik: -87.68253 
converged at iteration 123 with logLik: -81.22736 
converged at iteration 31 with logLik: -40.89953 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 18 with logLik: -39.32351 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 2 with logLik: -153.983 
NA/NaN/Inf in foreign function call (arg 10)converged at iteration 81 with logLik: -193.8534 
converged at iteration 31 with logLik: -82.21407 
converged at iteration 193 with logLik: -30.50687 
converged at iteration 27 with logLik: -69.78197 
unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’unable to find an inherited method for function ‘posterior’ for signature ‘object = "NULL"’Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(group, rsID, CLUSTER, TOTAL, REF, ALT, CHR, POS,
`p(D|loh)`, `p(D|het)`, `p(het|D)`, `p(loh|D)`, bayesFactors, inverseBayes,
LogBayesFactors, LogInverseBayes, Log10BayesFactors, Log10InverseBayes, AF,
CLUSTER_AF, CHR_F, alpha, beta, alpha2, beta2, orderNorm, state, S1, S2,
Log10BayesFactorsEdited, sequentialSum, sequentialSumOriginalBF, medianBF,
meanBF)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
Joining with `by = join_by(state, rleid, intervalStart, intervalEnd, CHR,
CLUSTER)`
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CLUSTER)`
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Error in `dplyr::summarise()`:
ℹ In argument: `dplyr::across()`.
ℹ In group 1: `CLUSTER = 1`, `CHR = 1`, `medianBF = -0.3335094`.
Caused by error:
! `dplyr::across()` must be size 1, not 117.
ℹ To return more or less than 1 row per group, use `reframe()`.
Backtrace:
     ▆
  1. ├─tLOH::hiddenMarkovAnalysis(df, initialStartProbabilities, trProbs)
  2. │ └─tLOH::regionFinalize(step4)
  3. │   ├─dplyr::arrange(...)
  4. │   ├─dplyr::group_by(...)
  5. │   ├─dplyr::arrange(...)
  6. │   ├─dplyr::summarise(...)
  7. │   └─dplyr:::summarise.grouped_df(...)
  8. │     └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
  9. │       └─base::withCallingHandlers(...)
 10. ├─dplyr:::dplyr_internal_error(...)
 11. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
 12. │   └─rlang:::signal_abort(cnd, .file)
 13. │     └─base::signalCondition(cnd)
 14. └─dplyr (local) `<fn>`(`<dpl:::__>`)
 15.   └─dplyr (local) handler(cnd)
 16.     └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
alleleFrequencyPlot 7.339  0.063   7.402
aggregateCHRPlot    6.251  0.301   6.544
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.23-bioc/meat/tLOH.Rcheck/00check.log’
for details.

Installation output

tLOH.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL tLOH
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘tLOH’ ...
** this is package ‘tLOH’ version ‘1.19.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tLOH)

Tests output


Example timings

tLOH.Rcheck/tLOH-Ex.timings

nameusersystemelapsed
aggregateCHRPlot6.2510.3016.544
alleleFrequencyPlot7.3390.0637.402
documentErrorRegions0.0020.0000.002