Multiple platform build/check report for BioC 3.22 - BUILD results for scTensor on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4810
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4548
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4528
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for scTensor on palomino8

To the developers/maintainers of the scTensor package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scTensor.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: scTensor

Version: 2.19.1

Command: chmod a+r scTensor -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data scTensor

StartedAt: 2025-06-18 22:04:41 -0400 (Wed, 18 Jun 2025)

EndedAt: 2025-06-18 22:07:07 -0400 (Wed, 18 Jun 2025)

EllapsedTime: 145.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r scTensor -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data scTensor
###
##############################################################################
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* checking for file 'scTensor/DESCRIPTION' ... OK
* preparing 'scTensor':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building 'scTensor.Rmd' using rmarkdown

Quitting from scTensor.Rmd:75-77 [AHub2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.Hub_get1()`:
! no records found for the given index
---
Backtrace:
    ▆
 1. ├─query(ah, c("LRBaseDb", "Homo sapiens", "v002"))[[1]]
 2. └─query(ah, c("LRBaseDb", "Homo sapiens", "v002"))[[1]]
 3.   └─AnnotationHub (local) .local(x, i, j = j, ...)
 4.     └─AnnotationHub:::.Hub_get1(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'scTensor.Rmd' failed with diagnostics:
no records found for the given index
--- failed re-building 'scTensor.Rmd'

--- re-building 'scTensor_1_Data_format_ID_Conversion.Rmd' using rmarkdown
--- finished re-building 'scTensor_1_Data_format_ID_Conversion.Rmd'

--- re-building 'scTensor_2_Report_Interpretation.Rmd' using rmarkdown
--- finished re-building 'scTensor_2_Report_Interpretation.Rmd'

--- re-building 'scTensor_3_CCI_Simulation.Rmd' using rmarkdown
--- finished re-building 'scTensor_3_CCI_Simulation.Rmd'

--- re-building 'scTensor_4_Reanalysis.Rmd' using rmarkdown
--- finished re-building 'scTensor_4_Reanalysis.Rmd'

SUMMARY: processing the following file failed:
  'scTensor.Rmd'

Error: Vignette re-building failed.
Execution halted