Multiple platform build/check report for BioC 3.22 - BUILD results for qcmetrics on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4553
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4595
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4537
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for qcmetrics on kjohnson3

To the developers/maintainers of the qcmetrics package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qcmetrics.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: qcmetrics

Version: 1.47.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data qcmetrics

StartedAt: 2025-08-08 17:19:44 -0400 (Fri, 08 Aug 2025)

EndedAt: 2025-08-08 17:19:55 -0400 (Fri, 08 Aug 2025)

EllapsedTime: 11.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data qcmetrics
###
##############################################################################
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* checking for file ‘qcmetrics/DESCRIPTION’ ... OK
* preparing ‘qcmetrics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘qcmetrics.Rmd’ using rmarkdown
2025-08-08 17:19:52.824 R[61415:487189083] XType: Using static font registry.

Quitting from qcmetrics.Rmd:220-226 [protqc3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.frame()`:
! arguments imply differing number of rows: 23, 21
---
Backtrace:
     ▆
  1. ├─MSnbase::plotMzDelta(exp, plot = FALSE, verbose = FALSE)
  2. └─MSnbase::plotMzDelta(exp, plot = FALSE, verbose = FALSE)
  3.   └─MSnbase (local) .local(object, ...)
  4.     └─MSnbase:::plotMzDelta_MSnExp(...)
  5.       └─BiocGenerics::cbind(PSMatch::getAminoAcids(), x_offset, y_offset)
  6.         ├─BiocGenerics (local) standardGeneric("cbind")
  7.         │ ├─BiocGenerics::eval(mc, env)
  8.         │ └─base::eval(mc, env)
  9.         │   └─base::eval(mc, env)
 10.         └─base::cbind(...)
 11.           └─base::cbind(deparse.level, ...)
 12.             └─base::data.frame(..., check.names = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'qcmetrics.Rmd' failed with diagnostics:
arguments imply differing number of rows: 23, 21
--- failed re-building ‘qcmetrics.Rmd’

SUMMARY: processing the following file failed:
  ‘qcmetrics.Rmd’

Error: Vignette re-building failed.
Execution halted