| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-04-09 11:56 -0400 (Wed, 09 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 beta (2025-04-02 r88102) -- "How About a Twenty-Six" | 4737 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-03 r88103 ucrt) -- "How About a Twenty-Six" | 4524 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1526/2335 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Kim Philipp Jablonski
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the pareg package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: pareg |
| Version: 1.11.1 |
| Command: chmod a+r pareg -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data pareg |
| StartedAt: 2025-04-08 21:16:15 -0400 (Tue, 08 Apr 2025) |
| EndedAt: 2025-04-08 21:33:05 -0400 (Tue, 08 Apr 2025) |
| EllapsedTime: 1010.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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###
### Running command:
###
### chmod a+r pareg -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data pareg
###
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* checking for file 'pareg/DESCRIPTION' ... OK
* preparing 'pareg':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'pareg.Rmd' using rmarkdown
Channels:
- anaconda
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\biocbuild\.basilisk\1.19.3\pareg\1.11.1\pareg
added / updated specs:
- python=3.12.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
bzip2-1.0.8 | h2bbff1b_6 110 KB anaconda
ca-certificates-2025.2.25 | haa95532_0 171 KB anaconda
expat-2.6.4 | h8ddb27b_0 415 KB anaconda
libffi-3.4.4 | hd77b12b_1 152 KB anaconda
openssl-3.0.16 | h3f729d1_0 8.0 MB anaconda
pip-25.0 | py312haa95532_0 3.0 MB anaconda
python-3.12.8 | h14ffc60_0 16.8 MB anaconda
setuptools-75.8.0 | py312haa95532_0 2.1 MB anaconda
sqlite-3.45.3 | h2bbff1b_0 1.4 MB anaconda
tk-8.6.14 | h0416ee5_0 3.7 MB anaconda
tzdata-2025a | h04d1e81_0 123 KB anaconda
vc-14.42 | haa95532_4 10 KB anaconda
vs2015_runtime-14.42.34433 | he0abc0d_4 2.3 MB anaconda
wheel-0.45.1 | py312haa95532_0 167 KB anaconda
xz-5.6.4 | h4754444_1 283 KB anaconda
zlib-1.2.13 | h8cc25b3_1 158 KB anaconda
------------------------------------------------------------
Total: 38.8 MB
The following NEW packages will be INSTALLED:
bzip2 anaconda/win-64::bzip2-1.0.8-h2bbff1b_6
ca-certificates anaconda/win-64::ca-certificates-2025.2.25-haa95532_0
expat anaconda/win-64::expat-2.6.4-h8ddb27b_0
libffi anaconda/win-64::libffi-3.4.4-hd77b12b_1
openssl anaconda/win-64::openssl-3.0.16-h3f729d1_0
pip anaconda/win-64::pip-25.0-py312haa95532_0
python anaconda/win-64::python-3.12.8-h14ffc60_0
setuptools anaconda/win-64::setuptools-75.8.0-py312haa95532_0
sqlite anaconda/win-64::sqlite-3.45.3-h2bbff1b_0
tk anaconda/win-64::tk-8.6.14-h0416ee5_0
tzdata anaconda/noarch::tzdata-2025a-h04d1e81_0
vc anaconda/win-64::vc-14.42-haa95532_4
vs2015_runtime anaconda/win-64::vs2015_runtime-14.42.34433-he0abc0d_4
wheel anaconda/win-64::wheel-0.45.1-py312haa95532_0
xz anaconda/win-64::xz-5.6.4-h4754444_1
zlib anaconda/win-64::zlib-1.2.13-h8cc25b3_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- anaconda
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
# All requested packages already installed.
Channels:
- anaconda
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
LibMambaUnsatisfiableError: Encountered problems while solving:
- package tensorflow-base-2.10.0-gpu_py37h9761872_0 requires python >=3.7,<3.8.0a0, but none of the providers can be installed
Could not solve for environment specs
The following packages are incompatible
\u251c\u2500 python 3.12.8** is requested and can be installed;
\u2514\u2500 tensorflow 2.10.0** is not installable because there are no viable options
\u251c\u2500 tensorflow 2.10.0 would require
\u2502 \u2514\u2500 tensorflow-base [2.10.0 eigen_py37he3c91d7_0|2.10.0 gpu_py37h9761872_0], which requires
\u2502 \u2514\u2500 python >=3.7,<3.8.0a0 , which conflicts with any installable versions previously reported;
\u251c\u2500 tensorflow 2.10.0 would require
\u2502 \u2514\u2500 tensorflow-base [2.10.0 eigen_py310he3c91d7_0|2.10.0 gpu_py310h9761872_0|2.10.0 mkl_py310h6a7f48e_0], which requires
\u2502 \u2514\u2500 python >=3.10,<3.11.0a0 , which conflicts with any installable versions previously reported;
\u251c\u2500 tensorflow 2.10.0 would require
\u2502 \u2514\u2500 tensorflow-base [2.10.0 eigen_py38he3c91d7_0|2.10.0 gpu_py38h9761872_0|2.10.0 mkl_py38h6a7f48e_0], which requires
\u2502 \u2514\u2500 python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported;
\u2514\u2500 tensorflow 2.10.0 would require
\u2514\u2500 tensorflow-base [2.10.0 eigen_py39he3c91d7_0|2.10.0 gpu_py39h9761872_0|2.10.0 mkl_py39h6a7f48e_0], which requires
\u2514\u2500 python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported.
Quitting from pareg.Rmd:144-150 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! one or more Python packages failed to install [error code 1]
---
Backtrace:
▆
1. └─pareg::pareg(...)
2. └─basilisk::basiliskStart(...)
3. └─basilisk::obtainEnvironmentPath(env)
4. └─basilisk::setupBasiliskEnv(...)
5. └─reticulate::conda_install(...)
6. └─reticulate:::stopf(fmt, result)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building 'pareg.Rmd'
--- re-building 'pathway_similarities.Rmd' using rmarkdown
--- finished re-building 'pathway_similarities.Rmd'
SUMMARY: processing the following file failed:
'pareg.Rmd'
Error: Vignette re-building failed.
Execution halted