| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root"
| 4514 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root"
| 4361 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root"
| 1031 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"
| 4491 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
| 4496 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
BUILD results for omicsViewer on lconway
To the developers/maintainers of the omicsViewer package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/omicsViewer.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
|
raw results
Summary
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data omicsViewer
###
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* checking for file ‘omicsViewer/DESCRIPTION’ ... OK
* preparing ‘omicsViewer’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
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ERROR: dependencies ‘survminer’, ‘fastmatch’, ‘reshape2’, ‘beeswarm’, ‘DT’, ‘shinythemes’, ‘shinyWidgets’, ‘plotly’, ‘networkD3’, ‘RColorBrewer’, ‘fgsea’, ‘openxlsx’, ‘psych’, ‘shinybusy’, ‘ggseqlogo’, ‘shinyjs’, ‘flatxml’, ‘ggplot2’, ‘shinycssloaders’, ‘ROCR’, ‘drc’ are not available for package ‘omicsViewer’
Perhaps try a variation of:
install.packages(c('survminer', 'fastmatch', 'reshape2', 'beeswarm', 'DT', 'shinythemes', 'shinyWidgets', 'plotly', 'networkD3', 'RColorBrewer', 'fgsea', 'openxlsx', 'psych', 'shinybusy', 'ggseqlogo', 'shinyjs', 'flatxml', 'ggplot2', 'shinycssloaders', 'ROCR', 'drc'))
* removing ‘/private/tmp/RtmpDxt23W/Rinst3cdb41312b85/omicsViewer’
-----------------------------------
ERROR: package installation failed
