Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-09 12:08 -0400 (Sat, 09 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1315/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mobileRNA 1.5.1 (landing page) Katie Jeynes-Cupper
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the mobileRNA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: mobileRNA |
Version: 1.5.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.5.1.tar.gz |
StartedAt: 2025-08-08 22:23:03 -0400 (Fri, 08 Aug 2025) |
EndedAt: 2025-08-08 22:28:38 -0400 (Fri, 08 Aug 2025) |
EllapsedTime: 335.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mobileRNA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.5.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/mobileRNA.Rcheck’ * using R version 4.5.1 (2025-06-13) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘mobileRNA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mobileRNA’ version ‘1.5.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Imports includes 24 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally. * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mobileRNA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed RNAdistribution 12.692 0.089 12.825 RNAsubset 11.774 0.057 11.895 RNAdicercall 11.470 0.160 11.680 RNAdifferentialAnalysis 7.967 0.214 8.230 RNAsummary 5.681 0.101 5.809 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
mobileRNA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mobileRNA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘mobileRNA’ ... ** this is package ‘mobileRNA’ version ‘1.5.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mobileRNA)
mobileRNA.Rcheck/mobileRNA-Ex.timings
name | user | system | elapsed | |
RNAattributes | 1.408 | 0.027 | 1.443 | |
RNAdf2se | 0.307 | 0.005 | 0.315 | |
RNAdicercall | 11.47 | 0.16 | 11.68 | |
RNAdifferentialAnalysis | 7.967 | 0.214 | 8.230 | |
RNAdistribution | 12.692 | 0.089 | 12.825 | |
RNAfeatures | 1.463 | 0.014 | 1.485 | |
RNAimport | 0 | 0 | 0 | |
RNAmergeAnnotations | 0.319 | 0.006 | 0.327 | |
RNAmergeGenomes | 0.055 | 0.003 | 0.059 | |
RNAmobile | 0.710 | 0.015 | 0.728 | |
RNApopulation | 2.274 | 0.019 | 2.301 | |
RNAreorder | 0.202 | 0.003 | 0.206 | |
RNAsequences | 1.647 | 0.015 | 1.667 | |
RNAsubset | 11.774 | 0.057 | 11.895 | |
RNAsummary | 5.681 | 0.101 | 5.809 | |
mRNA_data | 0.034 | 0.002 | 0.036 | |
mapRNA | 0 | 0 | 0 | |
plotHeatmap | 0.734 | 0.012 | 0.752 | |
plotRNAfeatures | 2.230 | 0.054 | 2.302 | |
plotSampleDistance | 2.813 | 0.040 | 2.871 | |
plotSamplePCA | 3.293 | 0.036 | 3.345 | |
sRNA_data | 0.163 | 0.003 | 0.167 | |