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This page was generated on 2025-08-09 12:08 -0400 (Sat, 09 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4553
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1315/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mobileRNA 1.5.1  (landing page)
Katie Jeynes-Cupper
Snapshot Date: 2025-08-08 13:45 -0400 (Fri, 08 Aug 2025)
git_url: https://git.bioconductor.org/packages/mobileRNA
git_branch: devel
git_last_commit: 072fb25
git_last_commit_date: 2025-07-23 12:46:28 -0400 (Wed, 23 Jul 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for mobileRNA on lconway

To the developers/maintainers of the mobileRNA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mobileRNA
Version: 1.5.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.5.1.tar.gz
StartedAt: 2025-08-08 22:23:03 -0400 (Fri, 08 Aug 2025)
EndedAt: 2025-08-08 22:28:38 -0400 (Fri, 08 Aug 2025)
EllapsedTime: 335.4 seconds
RetCode: 0
Status:   OK  
CheckDir: mobileRNA.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.5.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/mobileRNA.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mobileRNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mobileRNA’ version ‘1.5.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 24 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mobileRNA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
RNAdistribution         12.692  0.089  12.825
RNAsubset               11.774  0.057  11.895
RNAdicercall            11.470  0.160  11.680
RNAdifferentialAnalysis  7.967  0.214   8.230
RNAsummary               5.681  0.101   5.809
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

mobileRNA.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mobileRNA
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘mobileRNA’ ...
** this is package ‘mobileRNA’ version ‘1.5.1’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mobileRNA)

Tests output


Example timings

mobileRNA.Rcheck/mobileRNA-Ex.timings

nameusersystemelapsed
RNAattributes1.4080.0271.443
RNAdf2se0.3070.0050.315
RNAdicercall11.47 0.1611.68
RNAdifferentialAnalysis7.9670.2148.230
RNAdistribution12.692 0.08912.825
RNAfeatures1.4630.0141.485
RNAimport000
RNAmergeAnnotations0.3190.0060.327
RNAmergeGenomes0.0550.0030.059
RNAmobile0.7100.0150.728
RNApopulation2.2740.0192.301
RNAreorder0.2020.0030.206
RNAsequences1.6470.0151.667
RNAsubset11.774 0.05711.895
RNAsummary5.6810.1015.809
mRNA_data0.0340.0020.036
mapRNA000
plotHeatmap0.7340.0120.752
plotRNAfeatures2.2300.0542.302
plotSampleDistance2.8130.0402.871
plotSamplePCA3.2930.0363.345
sRNA_data0.1630.0030.167