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This page was generated on 2025-06-19 12:06 -0400 (Thu, 19 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4810
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4548
kjohnson3macOS 13.7.1 Venturaarm644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4528
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1167/2309HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.81.0  (landing page)
Maria Jose Nueda
Snapshot Date: 2025-06-18 13:25 -0400 (Wed, 18 Jun 2025)
git_url: https://git.bioconductor.org/packages/maSigPro
git_branch: devel
git_last_commit: 6ba818f
git_last_commit_date: 2025-04-15 09:37:14 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for maSigPro on taishan

To the developers/maintainers of the maSigPro package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: maSigPro
Version: 1.81.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings maSigPro_1.81.0.tar.gz
StartedAt: 2025-06-17 09:02:14 -0000 (Tue, 17 Jun 2025)
EndedAt: 2025-06-17 09:05:24 -0000 (Tue, 17 Jun 2025)
EllapsedTime: 190.3 seconds
RetCode: 0
Status:   OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings maSigPro_1.81.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/maSigPro.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.81.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
IsoModel      15.720  0.004  15.773
getDSPatterns 15.702  0.000  15.752
tableDS       15.675  0.004  15.721
PodiumChange  15.650  0.000  15.702
getDS         15.576  0.003  15.624
IsoPlot       15.351  0.000  15.397
seeDS         15.313  0.004  15.361
ISOdata       15.227  0.024  15.298
ISOdesign     15.030  0.000  15.074
T.fit          7.504  0.000   7.525
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

maSigPro.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL maSigPro
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘maSigPro’ ...
** this is package ‘maSigPro’ version ‘1.81.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output


Example timings

maSigPro.Rcheck/maSigPro-Ex.timings

nameusersystemelapsed
ISOdata15.227 0.02415.298
ISOdesign15.030 0.00015.074
IsoModel15.720 0.00415.773
IsoPlot15.351 0.00015.397
NBdata0.0070.0000.007
NBdesign0.0010.0000.000
PlotGroups0.0370.0000.037
PlotProfiles0.0040.0000.005
PodiumChange15.650 0.00015.702
T.fit7.5040.0007.525
average.rows0.0030.0000.003
data.abiotic0.0050.0040.009
edesign.abiotic0.0020.0000.002
edesignCT0.0010.0000.001
edesignDR0.0010.0000.001
get.siggenes3.4820.0003.493
getDS15.576 0.00315.624
getDSPatterns15.702 0.00015.752
i.rank000
maSigProUsersGuide0.0020.0020.003
make.design.matrix0.0040.0010.005
p.vector2.3490.0002.356
position0.0010.0000.001
reg.coeffs000
see.genes1.1710.0081.182
seeDS15.313 0.00415.361
stepback0.0280.0000.028
stepfor0.1320.0000.131
suma2Venn0.0220.0000.024
tableDS15.675 0.00415.721
two.ways.stepback0.1070.0000.107
two.ways.stepfor0.1440.0000.144