Multiple platform build/check report for BioC 3.22 - BUILD results for immunogenViewer on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4810
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4548
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4528
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for immunogenViewer on kjohnson3

To the developers/maintainers of the immunogenViewer package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunogenViewer.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: immunogenViewer

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data immunogenViewer

StartedAt: 2025-06-18 16:38:50 -0400 (Wed, 18 Jun 2025)

EndedAt: 2025-06-18 16:39:06 -0400 (Wed, 18 Jun 2025)

EllapsedTime: 16.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data immunogenViewer
###
##############################################################################
##############################################################################


* checking for file ‘immunogenViewer/DESCRIPTION’ ... OK
* preparing ‘immunogenViewer’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunogenViewer_vignette.Rmd’ using rmarkdown

Quitting from immunogenViewer_vignette.Rmd:77-81 [get-features]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! lexical error: invalid char in json text.
                                       <!DOCTYPE html> <html lang="en"
                     (right here) ------^
---
Backtrace:
    ▆
 1. └─immunogenViewer::getProteinFeatures("Q9NZC2")
 2.   └─immunogenViewer:::accessPredictProtein(uniprot)
 3.     └─jsonlite::fromJSON(httr::content(response, "text", encoding = "UTF-8"))
 4.       └─jsonlite:::parse_and_simplify(...)
 5.         └─jsonlite:::parseJSON(txt, bigint_as_char)
 6.           └─jsonlite:::parse_string(txt, bigint_as_char)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'immunogenViewer_vignette.Rmd' failed with diagnostics:
lexical error: invalid char in json text.
                                       <!DOCTYPE html> <html lang="en"
                     (right here) ------^

--- failed re-building ‘immunogenViewer_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘immunogenViewer_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted