Till Soerensen
| Snapshot Date: 2025-06-18 13:25 -0400 (Wed, 18 Jun 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 40cdc44 |
| git_last_commit_date: 2025-04-15 10:48:52 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-06-19 12:06 -0400 (Thu, 19 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4810 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" | 4548 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4528 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1028/2309 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.41.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.41.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-06-17 00:14:04 -0000 (Tue, 17 Jun 2025) |
| EndedAt: 2025-06-17 00:17:16 -0000 (Tue, 17 Jun 2025) |
| EllapsedTime: 192.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=173<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 10 iterations
cluster 2(N=72) has 3 sub-cluster at 3 (9), ICL=79<>30
split 2 into 3 clusters
cluster 1(N=232) has 3 sub-cluster at 3 (13), ICL=45<>30
split 1 into 3 clusters
cluster 1(N=232) has 3 sub-cluster at 3 (13), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->6 N=605
EM 6 takes 0 mins, 23 iterations
cluster 2(N=18) has 2 sub-cluster at 2 (5), ICL=26<>34
cluster 3(N=41) has 3 sub-cluster at 3 (9), ICL=15<>34
cluster 5(N=75) has 3 sub-cluster at 3 (18), ICL=13<>34
cluster 6(N=54) has 4 sub-cluster at 4 (7), ICL=6.1<>34
cluster 1(N=389) has 8 sub-cluster at 8 (28), ICL=5.8<>34
cluster 1(N=389) has 8 sub-cluster at 8 (28), ICL=0<>34
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=6->6 N=1210
EM 6 takes 0 mins, 8 iterations
cluster 2(N=30) has 2 sub-cluster at 2 (6), ICL=37<>37
cluster 5(N=135) has 5 sub-cluster at 5 (53), ICL=18<>37
cluster 4(N=55) has 5 sub-cluster at 5 (13), ICL=18<>37
cluster 6(N=121) has 7 sub-cluster at 8 (22), ICL=16<>37
cluster 3(N=76) has 4 sub-cluster at 4 (10), ICL=15<>37
cluster 2(N=30) has 2 sub-cluster at 2 (6), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->6 N=2420
EM 6 takes 0 mins, 5 iterations
cluster 2(N=62) has 3 sub-cluster at 4 (12), ICL=57<>41
split 2 into 3 clusters
cluster 5(N=283) has 2 sub-cluster at 2 (8), ICL=23<>41
cluster 4(N=86) has 5 sub-cluster at 5 (32), ICL=21<>41
cluster 6(N=226) has 7 sub-cluster at 7 (42), ICL=16<>41
cluster 3(N=138) has 6 sub-cluster at 6 (31), ICL=14<>41
cluster 1(N=1641) has 3 sub-cluster at 3 (6), ICL=4.1<>41
cluster 1(N=1641) has 3 sub-cluster at 3 (6), ICL=0<>41
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=6->8 N=4841
EM 8 takes 0 mins, 9 iterations
cluster 5(N=299) has 3 sub-cluster at 3 (9), ICL=38<>45
cluster 6(N=194) has 3 sub-cluster at 3 (41), ICL=32<>45
cluster 1(N=3230) has 3 sub-cluster at 3 (7), ICL=31<>45
cluster 2(N=79) has 4 sub-cluster at 4 (16), ICL=23<>45
cluster 8(N=459) has 3 sub-cluster at 3 (10), ICL=22<>45
cluster 7(N=542) has 2 sub-cluster at 2 (6), ICL=21<>45
cluster 3(N=42) has 3 sub-cluster at 4 (7), ICL=12<>45
cluster 1(N=3230) has 3 sub-cluster at 3 (7), ICL=0<>45
Model Refinement takes 0.17 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=8->8 N=9682
EM 8 takes 0 mins, 5 iterations
cluster 1(N=6477) has 3 sub-cluster at 3 (7), ICL=97<>48
split 1 into 3 clusters
cluster 5(N=557) has 3 sub-cluster at 3 (7), ICL=61<>48
split 5 into 3 clusters
cluster 8(N=916) has 3 sub-cluster at 3 (10), ICL=51<>48
split 8 into 3 clusters
cluster 4(N=50) has 2 sub-cluster at 2 (100), ICL=47<>48
cluster 2(N=158) has 4 sub-cluster at 4 (16), ICL=42<>48
cluster 6(N=392) has 3 sub-cluster at 3 (33), ICL=38<>48
cluster 7(N=1122) has 2 sub-cluster at 2 (5), ICL=36<>48
cluster 3(N=76) has 3 sub-cluster at 4 (11), ICL=4.8<>48
cluster 1(N=6477) has 3 sub-cluster at 3 (7), ICL=0<>48
Model Refinement takes 0.2 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=8->14 N=9682
EM 14 takes 0 mins, 5 iterations
cluster 11(N=1120) has 2 sub-cluster at 2 (6), ICL=42<>48
cluster 4(N=158) has 4 sub-cluster at 4 (16), ICL=42<>48
cluster 6(N=51) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 10(N=392) has 3 sub-cluster at 3 (33), ICL=38<>48
cluster 9(N=89) has 2 sub-cluster at 2 (7), ICL=16<>48
cluster 7(N=355) has 2 sub-cluster at 2 (7), ICL=14<>48
cluster 8(N=184) has 6 sub-cluster at 8 (40), ICL=10<>48
cluster 14(N=52) has 2 sub-cluster at 2 (100), ICL=6.1<>48
cluster 5(N=75) has 3 sub-cluster at 4 (13), ICL=4<>48
cluster 12(N=383) has 5 sub-cluster at 5 (39), ICL=3.4<>48
cluster 1(N=306) has 2 sub-cluster at 2 (9), ICL=2<>48
cluster 1(N=306) has 2 sub-cluster at 2 (9), ICL=0<>48
Model Refinement takes 0.32 mins(max 2: 0.067)
Fit Model 8 of (6/10) K=14->14 N=9682
EM 14 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (16), ICL=141<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (16), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 11 iterations
cluster 1(N=74) has 3 sub-cluster at 3 (9), ICL=87<>25
split 1 into 3 clusters
cluster 2(N=231) has 2 sub-cluster at 2 (8), ICL=23<>25
cluster 1(N=74) has 3 sub-cluster at 3 (9), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 2(N=70) has 2 sub-cluster at 2 (6), ICL=41<>28
split 2 into 2 clusters
cluster 4(N=430) has 2 sub-cluster at 2 (5), ICL=23<>28
cluster 1(N=53) has 4 sub-cluster at 4 (13), ICL=23<>28
cluster 3(N=60) has 3 sub-cluster at 3 (16), ICL=20<>28
cluster 1(N=53) has 4 sub-cluster at 4 (13), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 11 iterations
cluster 1(N=108) has 2 sub-cluster at 2 (8), ICL=56<>31
split 1 into 2 clusters
cluster 3(N=34) has 3 sub-cluster at 3 (11), ICL=31<>31
split 3 into 3 clusters
cluster 4(N=130) has 5 sub-cluster at 6 (31), ICL=22<>31
cluster 2(N=111) has 5 sub-cluster at 5 (26), ICL=15<>31
cluster 5(N=835) has 8 sub-cluster at 8 (24), ICL=3.5<>31
cluster 1(N=108) has 2 sub-cluster at 2 (8), ICL=0<>31
Model Refinement takes 0.083 mins(max 4: 0.033)
Fit Model 4 of (6/10) K=5->8 N=2420
EM 7 takes 0 mins, 8 iterations
cluster 5(N=8) has 2 sub-cluster at 2 (100), ICL=47<>34
split 5 into 2 clusters
cluster 2(N=101) has 4 sub-cluster at 4 (13), ICL=27<>34
cluster 7(N=1672) has 3 sub-cluster at 3 (6), ICL=24<>34
cluster 1(N=137) has 3 sub-cluster at 3 (9), ICL=22<>34
cluster 6(N=276) has 5 sub-cluster at 5 (39), ICL=17<>34
cluster 3(N=196) has 4 sub-cluster at 4 (21), ICL=16<>34
cluster 4(N=53) has 4 sub-cluster at 4 (8), ICL=14<>34
cluster 1(N=137) has 3 sub-cluster at 3 (9), ICL=0<>34
Model Refinement takes 0.13 mins(max 7: 0.05)
Fit Model 5 of (6/10) K=7->8 N=4841
EM 7 takes 0.017 mins, 9 iterations
cluster 7(N=3264) has 3 sub-cluster at 3 (7), ICL=76<>37
split 7 into 3 clusters
cluster 1(N=287) has 3 sub-cluster at 3 (15), ICL=41<>37
split 1 into 3 clusters
cluster 2(N=202) has 2 sub-cluster at 2 (8), ICL=39<>37
split 2 into 2 clusters
cluster 6(N=571) has 2 sub-cluster at 2 (6), ICL=33<>37
cluster 4(N=75) has 3 sub-cluster at 4 (8), ICL=23<>37
cluster 3(N=455) has 3 sub-cluster at 3 (29), ICL=18<>37
cluster 5(N=21) has 2 sub-cluster at 2 (5), ICL=0.71<>37
cluster 1(N=287) has 3 sub-cluster at 3 (15), ICL=0<>37
Model Refinement takes 0.17 mins(max 7: 0.067)
Fit Model 6 of (6/10) K=7->12 N=9682
EM 12 takes 0.033 mins, 17 iterations
cluster 11(N=370) has 2 sub-cluster at 2 (5), ICL=131<>40
split 11 into 2 clusters
cluster 6(N=905) has 2 sub-cluster at 2 (33), ICL=62<>40
split 6 into 2 clusters
cluster 7(N=157) has 4 sub-cluster at 4 (11), ICL=45<>40
split 7 into 4 clusters
cluster 8(N=50) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 9(N=1120) has 2 sub-cluster at 2 (5), ICL=39<>40
cluster 1(N=170) has 6 sub-cluster at 8 (43), ICL=21<>40
cluster 2(N=372) has 7 sub-cluster at 8 (24), ICL=21<>40
cluster 3(N=89) has 2 sub-cluster at 2 (13), ICL=19<>40
cluster 5(N=213) has 4 sub-cluster at 4 (22), ICL=15<>40
cluster 4(N=230) has 7 sub-cluster at 8 (25), ICL=13<>40
cluster 1(N=170) has 6 sub-cluster at 8 (43), ICL=0<>40
Model Refinement takes 0.3 mins(max 10: 0.067)
Fit Model 7 of (6/10) K=12->17 N=9682
EM 17 takes 0.05 mins, 20 iterations
cluster 6(N=399) has 2 sub-cluster at 2 (20), ICL=22<>40
cluster 1(N=170) has 6 sub-cluster at 7 (46), ICL=20<>40
cluster 3(N=87) has 2 sub-cluster at 2 (13), ICL=20<>40
cluster 2(N=371) has 7 sub-cluster at 7 (24), ICL=19<>40
cluster 9(N=20) has 2 sub-cluster at 2 (7), ICL=18<>40
cluster 5(N=206) has 3 sub-cluster at 3 (22), ICL=15<>40
cluster 8(N=92) has 4 sub-cluster at 4 (18), ICL=14<>40
cluster 4(N=239) has 6 sub-cluster at 7 (42), ICL=11<>40
cluster 16(N=73) has 3 sub-cluster at 4 (36), ICL=11<>40
cluster 15(N=307) has 7 sub-cluster at 8 (36), ICL=9.7<>40
cluster 11(N=275) has 2 sub-cluster at 2 (10), ICL=4<>40
cluster 1(N=170) has 6 sub-cluster at 7 (46), ICL=0<>40
Model Refinement takes 0.35 mins(max 14: 0.05)
Fit Model 8 of (6/10) K=17->17 N=9682
EM 17 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.2 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted