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This page was generated on 2025-06-19 12:06 -0400 (Thu, 19 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4810
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4548
kjohnson3macOS 13.7.1 Venturaarm644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4528
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1034/2309HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iNETgrate 1.7.0  (landing page)
Habil Zare
Snapshot Date: 2025-06-18 13:25 -0400 (Wed, 18 Jun 2025)
git_url: https://git.bioconductor.org/packages/iNETgrate
git_branch: devel
git_last_commit: 9b0b9a7
git_last_commit_date: 2025-04-15 13:16:57 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for iNETgrate on taishan

To the developers/maintainers of the iNETgrate package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iNETgrate.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: iNETgrate
Version: 1.7.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:iNETgrate.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings iNETgrate_1.7.0.tar.gz
StartedAt: 2025-06-17 08:37:39 -0000 (Tue, 17 Jun 2025)
EndedAt: 2025-06-17 08:53:20 -0000 (Tue, 17 Jun 2025)
EllapsedTime: 941.1 seconds
RetCode: 0
Status:   OK  
CheckDir: iNETgrate.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:iNETgrate.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings iNETgrate_1.7.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/iNETgrate.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘iNETgrate/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iNETgrate’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘iNETgrate’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
iNETgrate         133.708  1.112 135.157
toyEigengenes      62.232  0.419  62.786
computEigengenes   61.226  0.271  61.601
toyComputEloci     59.386  0.802  60.346
analyzeSurvival    46.702  0.317  47.110
makeNetwork        40.397  0.170  40.667
computEigenloci    17.819  0.459  18.316
cleanAllData       13.134  0.363  13.626
accelFailAnalysis   6.571  0.131   6.719
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

iNETgrate.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL iNETgrate
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘iNETgrate’ ...
** this is package ‘iNETgrate’ version ‘1.7.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iNETgrate)

Tests output


Example timings

iNETgrate.Rcheck/iNETgrate-Ex.timings

nameusersystemelapsed
accelFailAnalysis6.5710.1316.719
analyzeSurvival46.702 0.31747.110
bestInetgrator0.2650.0300.425
cleanAllData13.134 0.36313.626
computEigengenes61.226 0.27161.601
computEigenloci17.819 0.45918.316
computeInetgrator0.2600.0380.301
computeUnion1.9980.0282.030
coxAnalysis1.9410.0001.945
createLocusGene0.1560.0000.157
distanceToTss3.4550.0443.508
downloaData000
electGenes2.4850.0122.504
filterLowCor0.6130.0000.614
findAliveCutoff0.1550.0000.155
findCore1.8080.0001.812
findTcgaDuplicates0.2110.0080.219
iNETgrate-package0.2480.0240.272
iNETgrate133.708 1.112135.157
inferEigengenes0.2710.0180.290
makeNetwork40.397 0.17040.667
plotKM0.3880.0040.393
plotLociNum0.2980.0160.314
plotLociTss0.0530.0000.053
prepareSurvival0.1610.0040.166
preprocessDnam1.1370.0191.159
sample2pat0.2000.0000.201
sampleData0.6840.2110.897
toyCleanedAml0.1270.0040.132
toyComputEloci59.386 0.80260.346
toyEigengenes62.232 0.41962.786
toyRawAml0.1590.0000.160