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This page was generated on 2025-06-19 12:06 -0400 (Thu, 19 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4810
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4548
kjohnson3macOS 13.7.1 Venturaarm644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4528
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 899/2309HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gpuMagic 1.25.0  (landing page)
Jiefei Wang
Snapshot Date: 2025-06-18 13:25 -0400 (Wed, 18 Jun 2025)
git_url: https://git.bioconductor.org/packages/gpuMagic
git_branch: devel
git_last_commit: b263609
git_last_commit_date: 2025-04-15 11:44:15 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  ERROR    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  ERROR    ERROR  skipped

INSTALL results for gpuMagic on taishan

To the developers/maintainers of the gpuMagic package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gpuMagic.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: gpuMagic
Version: 1.25.0
Command: /home/biocbuild/R/R/bin/R CMD INSTALL gpuMagic
StartedAt: 2025-06-16 20:17:37 -0000 (Mon, 16 Jun 2025)
EndedAt: 2025-06-16 20:17:40 -0000 (Mon, 16 Jun 2025)
EllapsedTime: 3.6 seconds
RetCode: 1
Status:   ERROR  

Command output

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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL gpuMagic
###
##############################################################################
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* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘gpuMagic’ ...
** this is package ‘gpuMagic’ version ‘1.25.0’
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
using C++11
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/home/biocbuild/R/R-4.5.0/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS  -DCL_SILENCE_DEPRECATION -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c C_Interface.cpp -o C_Interface.o
C_Interface.cpp: In function ‘SEXPREC* download(SEXP)’:
C_Interface.cpp:142:19: warning: ‘res’ may be used uninitialized [-Wmaybe-uninitialized]
  142 |         return(res);
      |                   ^
C_Interface.cpp:112:14: note: ‘res’ was declared here
  112 |         SEXP res;
      |              ^~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/home/biocbuild/R/R-4.5.0/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS  -DCL_SILENCE_DEPRECATION -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c R_functionRegistration.cpp -o R_functionRegistration.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/home/biocbuild/R/R-4.5.0/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS  -DCL_SILENCE_DEPRECATION -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c Tools.cpp -o Tools.o
Tools.cpp: In function ‘void errorHandle(std::string)’:
Tools.cpp:41:14: error: format not a string literal and no format arguments [-Werror=format-security]
   41 |         error(errorInfo.c_str());
Tools.cpp: In function ‘void warningHandle(std::string)’:
Tools.cpp:51:16: error: format not a string literal and no format arguments [-Werror=format-security]
   51 |         warning(warningInfo.c_str());
Tools.cpp: In function ‘void message(std::string)’:
Tools.cpp:60:16: error: format not a string literal and no format arguments [-Werror=format-security]
   60 |         Rprintf(msg.c_str());
      |         ~~~~~~~^~~~~~~~~~~~~
cc1plus: some warnings being treated as errors
make: *** [/home/biocbuild/R/R-4.5.0/etc/Makeconf:211: Tools.o] Error 1
ERROR: compilation failed for package ‘gpuMagic’
* removing ‘/home/biocbuild/R/R-4.5.0/site-library/gpuMagic’